RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PRPF4BQ13523 1007 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 FAM47CQ5HY64 1035 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 FAM26DQ5JW98 314 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 INTS8Q75QN2 995 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 TAS1R3Q7RTX0 852 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 IRF2BP1Q8IU81 584 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 DNAJB3Q8WWF6 145 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 IQCDQ96DY2 449 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 CNOT6LQ96LI5 555 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 FBXL18Q96ME1 805 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 TOX2Q96NM4 488 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 ACO2Q99798 780 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 FDXACB1Q9BRP7 624 aaPredicted RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 KIFC3Q9BVG8 833 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 TMEM106CQ9BVX2 250 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 CELF4Q9BZC1 486 aaKnown RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 TRIM5Q9C035 493 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 ARMCX3Q9UH62 379 aaPredicted RBP11.11□□□□□ -0.63
USP39-215ENST00000481409 TRPV2Q9Y5S1 764 aa11.11□□□□□ -0.63
USP39-215ENST00000481409 A0A0B4J269 797 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 A0A1B0GTH6 734 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 N4BP3O15049 544 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 EXOC3O60645 756 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 PROZP22891 400 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 MTIF2P46199 727 aaKnown RBP11.1□□□□□ -0.63
USP39-215ENST00000481409 MCL1Q07820 350 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 BFSP2Q13515 415 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 HIC1Q14526 733 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 SURF1Q15526 300 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 MAN2A1Q16706 1144 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 DCAF4L1Q3SXM0 396 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 CCDC40Q4G0X9 1142 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 ATF7IP2Q5U623 682 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 MPZL3Q6UWV2 235 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 RUFY4Q6ZNE9 571 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 ANKRD33Q7Z3H0 272 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 KSR1Q8IVT5 923 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 FAM186BQ8IYM0 893 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 GPD1LQ8N335 351 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 POMGNT1Q8WZA1 660 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 ADPGKQ9BRR6 497 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 TUBGCP2Q9BSJ2 902 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 FAM49AQ9H0Q0 323 aaPredicted RBP11.1□□□□□ -0.63
USP39-215ENST00000481409 CHST12Q9NRB3 414 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 HSPBP1Q9NZL4 362 aa11.1□□□□□ -0.63
USP39-215ENST00000481409 TRIP12Q14669 1992 aaPredicted RBP11.1□□□□□ -0.63
USP39-215ENST00000481409 A0A1B0GUA9 196 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 ZNF233A6NK53 670 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 GOLGA6L6A8MZA4 724 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 GPR182O15218 404 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 PMM2O15305 246 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 EXTL3O43909 919 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 N4BP1O75113 896 aaKnown RBP11.09□□□□□ -0.63
USP39-215ENST00000481409 MCF2P10911 925 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 KRT13P13646 458 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 ADSSP30520 456 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 CCDC173Q0VFZ6 552 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 SNX17Q15036 470 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 KRT31Q15323 416 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 AMHR2Q16671 573 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 SMYD5Q6GMV2 418 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 NOTUMQ6P988 496 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 TRIM59Q8IWR1 403 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 TMC2Q8TDI7 906 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 TSPAN18Q96SJ8 248 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 NOC4LQ9BVI4 516 aaKnown RBP11.09□□□□□ -0.63
USP39-215ENST00000481409 PTPRHQ9HD43 1115 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 AGO2Q9UKV8 859 aaKnown RBP11.09□□□□□ -0.63
USP39-215ENST00000481409 DAAM1Q9Y4D1 1078 aa11.09□□□□□ -0.63
USP39-215ENST00000481409 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP39-215ENST00000481409 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.09□□□□□ -0.63
USP39-215ENST00000481409 A0A1W2PQC6 194 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 GTPBP10A4D1E9 387 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 LGALS16A8MUM7 142 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ANKRD63C9JTQ0 380 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 CLIC2O15247 247 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 OGTO15294 1046 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 P4HA2O15460 535 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 AKAP3O75969 853 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ADCY5O95622 1261 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 CD4P01730 458 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 COL6A1P12109 1028 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ATP1A3P13637 1013 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 GTF2H1P32780 548 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ZNF75DP51815 510 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 COPB1P53618 953 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 AP3M2P53677 418 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 ZNF200P98182 395 aaPredicted RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 MGAT3Q09327 533 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 BFSP1Q12934 665 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 NOLC1Q14978 699 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP39-215ENST00000481409 NR1I3Q14994 352 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 SNRNP35Q16560 246 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 TMEM132AQ24JP5 1023 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 KIZQ2M2Z5 673 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 TRIM71Q2Q1W2 868 aaKnown RBP11.08□□□□□ -0.64
USP39-215ENST00000481409 VWA3BQ502W6 1294 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 FKBP15Q5T1M5 1219 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 CEP135Q66GS9 1140 aa11.08□□□□□ -0.64
USP39-215ENST00000481409 SLC39A4Q6P5W5 647 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms