RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RUBCNQ92622 972 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 REEP2Q9BRK0 252 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 PCDHB4Q9Y5E5 795 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 EMSYQ7Z589 1322 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 H7C0C1 242 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 ATP5OP48047 213 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 GPS1Q13098 491 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 C12orf60Q5U649 245 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 ISLR2Q6UXK2 745 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 CNKSR2Q8WXI2 1034 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 SH3GL2Q99962 352 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 NCF2P19878 526 aaPredicted RBP14.43□□□□□ -0.1
USP42-206ENST00000479544 KCNA3P22001 575 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 TMPRSS15P98073 1019 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 ARHGAP4P98171 946 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 LMBRD2Q68DH5 695 aaPredicted RBP14.43□□□□□ -0.1
USP42-206ENST00000479544 PPP4R3CPQ6ZMV5 832 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 TMC3Q7Z5M5 1100 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 SMC1BQ8NDV3 1235 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 SLC13A1Q9BZW2 595 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 TRABDQ9H4I3 376 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 PEX3P56589 373 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 PLCB4Q15147 1175 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 ZNF577Q9BSK1 485 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 ATP6V0A4Q9HBG4 840 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 GINS2Q9Y248 185 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 C15orf41Q9Y2V0 281 aa14.43□□□□□ -0.1
USP42-206ENST00000479544 RFC1P35251 1148 aaPredicted RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 DHX34Q14147 1143 aaKnown RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 ADGRF4Q8IZF3 695 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 OGFOD1Q8N543 542 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 NAF1Q96HR8 494 aaKnown RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 TTLL3Q9Y4R7 772 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 TCRBV5S4A2TA0A5A2 114 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 PPFIA2O75334 1257 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 ARFIP2P53365 341 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 PDIA2Q13087 525 aaKnown RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 MAPK7Q13164 816 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 GPATCH4Q5T3I0 446 aaKnown RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 LGSNQ5TDP6 509 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 KCNK18Q7Z418 384 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 RBM15Q96T37 977 aaKnown RBP eCLIP14.42□□□□□ -0.11e-6■■■■□ 21.5
USP42-206ENST00000479544 OSBPL7Q9BZF2 842 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 UBXN6Q9BZV1 441 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 GDF3Q9NR23 364 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 EXOC7Q9UPT5 735 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 F5H423 210 aaPredicted RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 ALAS1P13196 640 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 FIGNQ5HY92 759 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 APTXQ7Z2E3 356 aaKnown RBP14.42□□□□□ -0.1
USP42-206ENST00000479544 ERICH1Q86X53 443 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 ANLNQ9NQW6 1124 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 PNMA3Q9UL41 463 aa14.42□□□□□ -0.1
USP42-206ENST00000479544 NVLO15381 856 aaKnown RBP14.41□□□□□ -0.1
USP42-206ENST00000479544 AKR1B1P15121 316 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 BBOF1Q8ND07 529 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 SPATA20Q8TB22 786 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 SREK1Q8WXA9 508 aaKnown RBP14.41□□□□□ -0.1
USP42-206ENST00000479544 CFAP36Q96G28 342 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 SHCBP1LQ9BZQ2 653 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 ZWILCHQ9H900 591 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 CAMKK2Q96RR4 588 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 FOXO6A8MYZ6 492 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 MIIPQ5JXC2 388 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 TBC1D22AQ8WUA7 517 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 AGPAT1Q99943 283 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 CTNNAL1Q9UBT7 734 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 KDM6AO15550 1401 aaPredicted RBP14.41□□□□□ -0.1
USP42-206ENST00000479544 PHF2O75151 1096 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 ENO1P06733 434 aaKnown RBP14.41□□□□□ -0.1
USP42-206ENST00000479544 PON1P27169 355 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 ITGA8P53708 1063 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 ATXN3P54252 364 aaPredicted RBP14.41□□□□□ -0.1
USP42-206ENST00000479544 QRICH1Q2TAL8 776 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 TBC1D9BQ66K14 1250 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 RGS9BPQ6ZS82 235 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 SLC26A7Q8TE54 656 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.41□□□□□ -0.1
USP42-206ENST00000479544 TATDN2Q93075 761 aa14.41□□□□□ -0.1
USP42-206ENST00000479544 PGM1P36871 562 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 GEN1Q17RS7 908 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 PLSCR1O15162 318 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 CDH16O75309 829 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 LIG4P49917 911 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 KDM4CQ9H3R0 1056 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 PAPOLBQ9NRJ5 636 aaKnown RBP14.4□□□□□ -0.1
USP42-206ENST00000479544 SIK3Q9Y2K2 1263 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 A8MUI8 341 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 FOXN3O00409 490 aaPredicted RBP14.4□□□□□ -0.1
USP42-206ENST00000479544 KLRC4O43908 158 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 DNAJC6O75061 913 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 PIAS1O75925 651 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 POLR2MP0CAP2 368 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 GAP43P17677 238 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 PDE1BQ01064 536 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 TRAF1Q13077 416 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 RCN1Q15293 331 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 RABGAP1LQ5R372 815 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 CENPUQ71F23 418 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 AGR3Q8TD06 166 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms