RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 TINF2Q9BSI4 451 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 FUCA2Q9BTY2 467 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 BCAS3Q9H6U6 928 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 TUFT1Q9NNX1 390 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 C11orf16Q9NQ32 467 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 KBTBD4Q9NVX7 518 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 SAGE1Q9NXZ1 904 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 FLRT1Q9NZU1 646 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 SLC9A2Q9UBY0 812 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 POLIQ9UNA4 740 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 HTTP42858 3142 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 PCNTO95613 3336 aa7.42□□□□□ -1.22
USP48-208ENST00000479177 LYPLA2O95372 231 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 GGPS1O95749 300 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 P4HBP07237 508 aaKnown RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 SUPT20HL2P0C7V6 817 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 CYP2B6P20813 491 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 AFMP43652 599 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 C1QTNF8P60827 252 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 SP3Q02447 781 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 PRKCZQ05513 592 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 CTTNQ14247 550 aaKnown RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 NEDD9Q14511 834 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 TTLL4Q14679 1199 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 KIF22Q14807 665 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 CCL14Q16627 93 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 LRSAM1Q6UWE0 723 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 CYFIP1Q7L576 1253 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 SMAP1Q8IYB5 467 aaPredicted RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 GIMAP8Q8ND71 665 aaPredicted RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 SPATA20Q8TB22 786 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 LARP4BQ92615 738 aaKnown RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 CCDC34Q96HJ3 373 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 LPIN3Q9BQK8 851 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 LXNQ9BS40 222 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 ABHD16BQ9H3Z7 469 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 PDGFCQ9NRA1 345 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 RGL1Q9NZL6 768 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 WRAP73Q9P2S5 460 aaPredicted RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 HOOK1Q9UJC3 728 aaKnown RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 TUBE1Q9UJT0 475 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 DDX41Q9UJV9 622 aaKnown RBP7.41□□□□□ -1.22
USP48-208ENST00000479177 TELO2Q9Y4R8 837 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 IGSF9BQ9UPX0 1349 aa7.41□□□□□ -1.22
USP48-208ENST00000479177 MYMKA6NI61 221 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 E9PMD0 336 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 SORBS3O60504 671 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 SLITRK3O94933 977 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 FAM13AO94988 1023 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 SMC2O95347 1197 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 EYA4O95677 639 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 MYL1P05976 194 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PSAPP07602 524 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PLA2G4BP0C869 781 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 TXNP10599 105 aaKnown RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 XRCC5P13010 732 aaKnown RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 NID1P14543 1247 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 MZF1P28698 734 aaPredicted RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 CASP1P29466 404 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CYP2C19P33261 490 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 QARSP47897 775 aaKnown RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 SARSP49591 514 aaKnown RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 SLC12A3P55017 1021 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PSMC5P62195 406 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PSMC6P62333 389 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 SP4Q02446 784 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 ARHGAP1Q07960 439 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CUL4BQ13620 913 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 ACVR2BQ13705 512 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 STX1AQ16623 288 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 LY6KQ17RY6 165 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CELF3Q5SZQ8 465 aaKnown RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 NT5DC1Q5TFE4 455 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 MIS18BP1Q6P0N0 1132 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CNNM4Q6P4Q7 775 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 ABHD15Q6UXT9 468 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CCDC60Q8IWA6 550 aaPredicted RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 TPH2Q8IWU9 490 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CD99L2Q8TCZ2 262 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 TRIB2Q92519 343 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 STAMQ92783 540 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 COPS5Q92905 334 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 TRIM9Q9C026 710 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 ZSWIM4Q9H7M6 989 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 CNTN3Q9P232 1028 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 ZHX1Q9UKY1 873 aaPredicted RBP7.4□□□□□ -1.22
USP48-208ENST00000479177 GABRQQ9UN88 632 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 SAMM50Q9Y512 469 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PCDHA5Q9Y5H7 936 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 PCDHA10Q9Y5I2 948 aa7.4□□□□□ -1.22
USP48-208ENST00000479177 EMSYQ7Z589 1322 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 A0A087WWV3 80 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 IGKV6D-21A0A0A0MT36 114 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.39□□□□□ -1.23
USP48-208ENST00000479177 GSTTP1A0A1W2PQM5 241 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 ADCY6O43306 1168 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 KLRC4O43908 158 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 ZNF862O60290 1169 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 GH1P01241 217 aa7.39□□□□□ -1.23
USP48-208ENST00000479177 RPN1P04843 607 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms