RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 PLS3P13797 630 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 COMTP21964 271 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 GMPSP49915 693 aaPredicted RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF131P52739 623 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 KCNMA1Q12791 1236 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 MEA1Q16626 185 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 CRY2Q49AN0 593 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 SYCP2LQ5T4T6 812 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF720Q7Z2F6 126 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 GRK7Q8WTQ7 553 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 TCP11Q8WWU5 503 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 SLC35C1Q96A29 364 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 FAM149B1Q96BN6 582 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 ELAC2Q9BQ52 826 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 BCAS3Q9H6U6 928 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 GRID2IPA4D2P6 1211 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 MIF4GDA9UHW6 222 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 HMGB1P1B2RPK0 211 aaPredicted RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 BASP1P80723 227 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 KRT81Q14533 505 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 HADHQ16836 314 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 TKFCQ3LXA3 575 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 TPCN2Q8NHX9 752 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF302Q9NR11 478 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 SYNGAP1Q96PV0 1343 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 WDR46O15213 610 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 SLC16A3O15427 465 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 POLR2BP30876 1174 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 SFNP31947 248 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 OTOP1Q7RTM1 612 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 DHX38Q92620 1227 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 RIT2Q99578 217 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 ADPGKQ9BRR6 497 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 TARS2Q9BW92 718 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 MRPL47Q9HD33 250 aaKnown RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 HOXC10Q9NYD6 342 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 MAGED2Q9UNF1 606 aaPredicted RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 MAD1L1Q9Y6D9 718 aa11.81□□□□□ -0.52
COL27A1-204ENST00000477421 COL1A1P02452 1464 aaPredicted RBP11.81□□□□□ -0.52
COL27A1-204ENST00000477421 TLR3O15455 904 aaKnown RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 GNA15P30679 374 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 ALDH3A1P30838 453 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 SMAD1Q15797 465 aaKnown RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 BBS9Q3SYG4 887 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 NBPF12Q5TAG4 269 aaPredicted RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 STYK1Q6J9G0 422 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 WDR93Q6P2C0 686 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 APTXQ7Z2E3 356 aaKnown RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 DPP9Q86TI2 863 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 ERICH1Q86X53 443 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 CREG2Q8IUH2 290 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 MMGT1Q8N4V1 131 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 RNF149Q8NC42 400 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 SLC17A8Q8NDX2 589 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 CASKIN2Q8WXE0 1202 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 RNF34Q969K3 372 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 ATP6V1G3Q96LB4 118 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 RUNDC3BQ96NL0 473 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 ACAD9Q9H845 621 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 KCND1Q9NSA2 647 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 GGT7Q9UJ14 662 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 SGPL1O95470 568 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 IRAK1P51617 712 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 YWHAGP61981 247 aaKnown RBP eCLIP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 IFRD2Q12894 506 aaPredicted RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 MAPK6Q16659 721 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 NUGGCQ68CJ6 796 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 FAM47EQ6ZV65 393 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 RFX6Q8HWS3 928 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 SRRM1Q8IYB3 904 aaKnown RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 TBC1D31Q96DN5 1066 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 NGRNQ9NPE2 291 aaKnown RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 PNMA2Q9UL42 364 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF263O14978 683 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 MMEP08473 750 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 FAM153BP0C7A2 387 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 PMS2P54278 862 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 SLC12A3P55017 1021 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 PRKCEQ02156 737 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 E2F5Q15329 346 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 FAM153CQ494X1 144 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 FAM47CQ5HY64 1035 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 GPD1LQ8N335 351 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 FAM153AQ9UHL3 310 aa11.8□□□□□ -0.52
COL27A1-204ENST00000477421 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.8□□□□□ -0.52
COL27A1-204ENST00000477421 NKRFO15226 690 aaKnown RBP eCLIP11.79□□□□□ -0.52
COL27A1-204ENST00000477421 CROCCP2Q86T23 111 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 LRRC71Q8N4P6 559 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF280CQ8ND82 737 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 NLRP7Q8WX94 980 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 KAT5Q92993 513 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 HEXIM2Q96MH2 286 aaKnown RBP11.79□□□□□ -0.52
COL27A1-204ENST00000477421 TEX13BQ9BXU2 312 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 GGA3Q9NZ52 723 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.79□□□□□ -0.52
COL27A1-204ENST00000477421 CALCAP01258 141 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 HSPA6P17066 643 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 GABPAQ06546 454 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 ZNF568Q3ZCX4 644 aa11.79□□□□□ -0.52
COL27A1-204ENST00000477421 CBWD6Q4V339 395 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms