RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ANKS6Q68DC2 871 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 COQ10AQ96MF6 247 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 SYNPO2Q9UMS6 1093 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 MYPNQ86TC9 1320 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 SALL3Q9BXA9 1300 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 GAGE12BA1L429 117 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 GAGE12HA6NDE8 117 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 UNC119BA6NIH7 251 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 B4E1Z4 1266 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 PCDH8O95206 1070 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 APOL3O95236 402 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 ATP2A2P16615 1042 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 GZMKP49863 264 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 USP14P54578 494 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 NHLH2Q02577 135 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 TP53BP2Q13625 1128 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 PDCD4Q53EL6 469 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 FNDC3BQ53EP0 1204 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 CDCA2Q69YH5 1023 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 TAS1R1Q7RTX1 841 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 LYSMD2Q8IV50 215 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 CMTR2Q8IYT2 770 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 CPEB3Q8NE35 698 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 OR5M3Q8NGP4 307 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 HIST1H2AHQ96KK5 128 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 HIST1H2AJQ99878 128 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 LRFN3Q9BTN0 628 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 FRMD4BQ9Y2L6 1034 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 COL3A1P02461 1466 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 SPATA31A6Q5VVP1 1343 aa5.18□□□□□ -1.58
CCDC88A-212ENST00000474059 COL11A2P13942 1736 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 APPP05067 770 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 EGR2P11161 476 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 SQSTM1Q13501 440 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 SUPT20HQ8NEM7 779 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 MKL1Q969V6 931 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 ZNF496Q96IT1 587 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 FAM193BQ96PV7 902 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 SRPK1Q96SB4 655 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 DCLRE1CQ96SD1 692 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 ORAI3Q9BRQ5 295 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 CABP5Q9NP86 173 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 TOMM22Q9NS69 142 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 TMPRSS11EQ9UL52 423 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 PCDHB6Q9Y5E3 794 aa5.17□□□□□ -1.58
CCDC88A-212ENST00000474059 LCHNA4D1U4 455 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 TGM5O43548 720 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 OPA1O60313 960 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 SPDEFO95238 335 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 GTF2F1P35269 517 aaKnown RBP eCLIP5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 MPLP40238 635 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 FOXF2Q12947 444 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 DRICH1Q6PGQ1 229 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 SLC41A1Q8IVJ1 513 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 HIRIP3Q9BW71 556 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 MS4A5Q9H3V2 200 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 PRDM12Q9H4Q4 367 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 KANSL2Q9H9L4 492 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 PPP1R1BQ9UD71 204 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 ZMYM3Q14202 1370 aa5.16□□□□□ -1.58
CCDC88A-212ENST00000474059 C1QL1O75973 258 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 JMJD7P0C870 316 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 RANGAP1P46060 587 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 DSG1Q02413 1049 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 FAM102AQ5T9C2 384 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 TIGD7Q6NT04 549 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 PLXDC1Q8IUK5 500 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 LCORLQ8N3X6 602 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 CDYL2Q8N8U2 506 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 BOLLQ8N9W6 283 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 OR10H5Q8NGA6 315 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 ARMC5Q96C12 935 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 EPC1Q9H2F5 836 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 MAP3K2Q9Y2U5 619 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 INSL6Q9Y581 213 aa5.15□□□□□ -1.59
CCDC88A-212ENST00000474059 MGST3O14880 152 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 TMEM127O75204 238 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 MATN4O95460 622 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 HKR1P10072 659 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 LRRC32Q14392 662 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 UBE3CQ15386 1083 aa5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 USP36Q9P275 1121 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 TESQ9UGI8 421 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-212ENST00000474059 POLR2AP24928 1970 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ZNF891A8MT65 544 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 PPP1R12AO14974 1030 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ESRRBO95718 433 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ERBB2P04626 1255 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ITGB6P18564 788 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 DDX6P26196 483 aaKnown RBP eCLIP5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 AVPR1BP47901 424 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 DUSP2Q05923 314 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ZZZ3Q8IYH5 903 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 RNF169Q8NCN4 708 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 ANKS1AQ92625 1134 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 CEP95Q96GE4 821 aa5.13□□□□□ -1.59
CCDC88A-212ENST00000474059 PRSS38A1L453 326 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 PRR5-ARHGAP8B1AHC4 643 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 DIRC3C9JPN6 131 aa5.12□□□□□ -1.59
CCDC88A-212ENST00000474059 WNT10BO00744 389 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms