RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 EIF2AQ9BY44 585 aaKnown RBP21.96■■□□□ 1.11
COL9A3-210ENST00000472880 TRIM6Q9C030 488 aaPredicted RBP21.96■■□□□ 1.11
COL9A3-210ENST00000472880 CSRNP2Q9H175 543 aa21.96■■□□□ 1.11
COL9A3-210ENST00000472880 C2CD4DB7Z1M9 353 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 NRP1O14786 923 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 USO1O60763 962 aaKnown RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 ARL2P36404 184 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 MLH1P40692 756 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 ALYREFQ86V81 257 aaKnown RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 HACE1Q8IYU2 909 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 FBXL6Q8N531 539 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 PIGOQ8TEQ8 1089 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 NFKBIZQ9BYH8 718 aa21.95■■□□□ 1.1
COL9A3-210ENST00000472880 POLR3FQ9H1D9 316 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 MRPL17Q9NRX2 175 aaKnown RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 DBR1Q9UK59 544 aaKnown RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 PRG3Q9Y2Y8 225 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-210ENST00000472880 TRIOO75962 3097 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 URODP06132 367 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 ATP2B1P20020 1258 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 GLRA2P23416 452 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 MCM7P33993 719 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 ST3GAL1Q11201 340 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 ATAT1Q5SQI0 421 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 TDRD5Q8NAT2 981 aaKnown RBP21.94■■□□□ 1.1
COL9A3-210ENST00000472880 GAD1Q99259 594 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 APOL6Q9BWW8 343 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 SFXN1Q9H9B4 322 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 HES2Q9Y543 173 aa21.94■■□□□ 1.1
COL9A3-210ENST00000472880 ARL5CA6NH57 179 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 INPPL1O15357 1258 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 ARF4P18085 180 aaPredicted RBP21.93■■□□□ 1.1
COL9A3-210ENST00000472880 KLRC2P26717 231 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 OR1G1P47890 313 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 SCNN1GP51170 649 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 GUCY1B3Q02153 619 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 MTMR3Q13615 1198 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 AMHR2Q16671 573 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 TMC5Q6UXY8 1006 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 KREMEN2Q8NCW0 462 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 ASIC4Q96FT7 647 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 KLHL5Q96PQ7 755 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 PRRX2Q99811 253 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 HERC2P3Q9BVR0 1158 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 TMEM60Q9H2L4 133 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 RNF39Q9H2S5 420 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 MARCH5Q9NX47 278 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 SORCS3Q9UPU3 1222 aa21.93■■□□□ 1.1
COL9A3-210ENST00000472880 LRRIQ4A6NIV6 560 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 C2CD2LO14523 706 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 NR1I2O75469 434 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 SOD2P04179 222 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 CNPP09543 421 aaKnown RBP21.92■■□□□ 1.1
COL9A3-210ENST00000472880 XRCC6P12956 609 aaKnown RBP eCLIP21.92■■□□□ 1.1
COL9A3-210ENST00000472880 KANK3Q6NY19 840 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 COLGALT2Q8IYK4 626 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 ZFP42Q96MM3 310 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 NXF3Q9H4D5 531 aaKnown RBP21.92■■□□□ 1.1
COL9A3-210ENST00000472880 TUFT1Q9NNX1 390 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 SSX2IPQ9Y2D8 614 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 GIT1Q9Y2X7 761 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 KMT2EQ8IZD2 1858 aa21.92■■□□□ 1.1
COL9A3-210ENST00000472880 TDRD15B5MCY1 1934 aaKnown RBP21.91■■□□□ 1.1
COL9A3-210ENST00000472880 A0A087WWV3 80 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 B4GALT5O43286 388 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 CLCN4P51793 760 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 DSC1Q08554 894 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 SLC27A1Q6PCB7 646 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 MAEAQ7L5Y9 396 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 CCDC83Q8IWF9 413 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 UBALD2Q8IYN6 164 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 MCPH1Q8NEM0 835 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 C8orf76Q96K31 380 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 LIMCH1Q9UPQ0 1083 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 DENND4AQ7Z401 1863 aa21.91■■□□□ 1.1
COL9A3-210ENST00000472880 NPTXRO95502 500 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 ADH1AP07327 375 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 SPATA31C1P0DKV0 1188 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 GLUD2P49448 558 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 MRE11P49959 708 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 PTPN5P54829 565 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 IER5LQ5T953 404 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 ZBTB8OSQ8IWT0 167 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 ZDHHC14Q8IZN3 488 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 PLCD3Q8N3E9 789 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 PRSS33Q8NF86 280 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 ERMNQ8TAM6 284 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 GPRC5CQ9NQ84 441 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 USTQ9Y2C2 406 aa21.9■■□□□ 1.1
COL9A3-210ENST00000472880 ZMYM2Q9UBW7 1377 aa21.89■■□□□ 1.1
COL9A3-210ENST00000472880 LILRB3O75022 631 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 MED24O75448 989 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 SEC24BO95487 1268 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 OR52Z1P0C646 297 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 ORC2Q13416 577 aaPredicted RBP21.89■■□□□ 1.09
COL9A3-210ENST00000472880 ELMSAN1Q6PJG2 1045 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 CCDC149Q6ZUS6 474 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 GPR149Q86SP6 731 aa21.89■■□□□ 1.09
COL9A3-210ENST00000472880 CDR2LQ86X02 465 aaPredicted RBP21.89■■□□□ 1.09
COL9A3-210ENST00000472880 CATSPER3Q86XQ3 398 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms