RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IFT88Q13099 833 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 RPS6KA1Q15418 735 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 CIAPIN1Q6FI81 312 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 HIBCHQ6NVY1 386 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ELMSAN1Q6PJG2 1045 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 C16orf86Q6ZW13 317 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 STAMBPL1Q96FJ0 436 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 DUS3LQ96G46 650 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SEL1LQ9UBV2 794 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 GCOM1H8Y6P7 765 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 OPLAHO14841 1288 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 CYP1A2P05177 515 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MYZAPP0CAP1 466 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 UBA7P41226 1012 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGAP4P98171 946 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 TDRD12Q587J7 1177 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 TMCO4Q5TGY1 634 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 CAPRIN2Q6IMN6 1127 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 C2CD5Q86YS7 1000 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 GIMAP7Q8NHV1 300 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 C10orf82Q8WW14 230 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PTCD3Q96EY7 689 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PAIP2Q9BPZ3 127 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 STK33Q9BYT3 514 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SLC2A11Q9BYW1 496 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 DCLRE1BQ9H816 532 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 METTL5Q9NRN9 209 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ETAA1Q9NY74 926 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 GTF2IRD1Q9UHL9 959 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 CHKBQ9Y259 395 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SMIM31A0A1B0GVY4 71 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ZWINTO95229 277 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MOCS3O95396 460 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SPATA31C1P0DKV0 1188 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 GNA11P29992 359 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PHEXP78562 749 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 LSAMPQ13449 338 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 HLFQ16534 295 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 C4orf50Q6ZRC1 276 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 FAM81BQ96LP2 452 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 NUDT12Q9BQG2 462 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PNPLA8Q9NP80 782 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SPATS2LQ9NUQ6 558 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 IVNS1ABPQ9Y6Y0 642 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 STRCP1A6NGW2 1772 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PHF2O75151 1096 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ANP32DO95626 131 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 FGFR1P11362 822 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ITIH2P19823 946 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ACTR3P61158 418 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PLEKHG4Q58EX7 1191 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SFMBT2Q5VUG0 894 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 KYAT3Q6YP21 454 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 DACH2Q96NX9 599 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 TMEM47Q9BQJ4 181 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ADAMTS1Q9UHI8 967 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PLA2G4CQ9UP65 541 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 COG5Q9UP83 839 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 UBOX5O94941 541 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 DESP17661 470 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MTIF2P46199 727 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 KCNJ2P63252 427 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 BCL2A1Q16548 175 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 RABGAP1LQ5R372 815 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 INTS5Q6P9B9 1019 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MYOCDQ8IZQ8 938 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ISL2Q96A47 359 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MTIF3Q9H2K0 278 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ZBTB1Q9Y2K1 713 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 IGLV3-22A0A075B6J6 115 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ALOX15BO15296 676 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ATP2C2O75185 946 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 AFPP02771 609 aaKnown RBP5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MYO1EQ12965 1108 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PICALMQ13492 652 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 AAGABQ6PD74 315 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 PASD1Q8IV76 773 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MICAL1Q8TDZ2 1067 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 APBB2Q92870 758 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 SLC24A2Q9UI40 661 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 VAV3Q9UKW4 847 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 CDH7Q9ULB5 785 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF510Q9Y2H8 683 aa5.75□□□□□ -1.49
SYNE1-220ENST00000471834 MACROD2A1Z1Q3 448 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SP100P23497 879 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CRABP2P29373 138 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 AP3B2Q13367 1082 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DDB1Q16531 1140 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CABP7Q86V35 215 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SYCP3Q8IZU3 236 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ARMT1Q9H993 441 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 HSFX1Q9UBD0 423 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SAMM50Q9Y512 469 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 COMMD3-BMI1R4GMX3 469 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 RARBP10826 455 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 IMPDH2P12268 514 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PSMD8P48556 350 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DHX9Q08211 1270 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 VPS72Q15906 364 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 Q4G0T1 1027 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms