RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 TECP42680 631 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ME1P48163 572 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ORC2Q13416 577 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CALCRLQ16602 461 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LY6KQ17RY6 165 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 GJC2Q5T442 439 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CEP135Q66GS9 1140 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ARL6IP4Q66PJ3 421 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 XRRA1Q6P2D8 792 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 B3GNT9Q6UX72 402 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SEPT14Q6ZU15 432 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 C8orf86Q6ZUL3 223 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 NIPA1Q7RTP0 329 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CACTIN-AS1Q8N1I8 211 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 IGSF22Q8N9C0 903 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 KCNG4Q8TDN1 519 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 BSNDQ8WZ55 320 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SLC5A5Q92911 643 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 GPRASP2Q96D09 838 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 EPSTI1Q96J88 318 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LPIN3Q9BQK8 851 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ADAM19Q9H013 955 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CSRNP2Q9H175 543 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 TTC12Q9H892 705 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 VAV3Q9UKW4 847 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF236Q9UL36 1845 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 MYH7BA7E2Y1 1941 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 A0A087X0B3 334 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LOC102724159A0A0B4J2E5 919 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 METTL12A8MUP2 240 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LAD1O00515 517 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 TBX3O15119 743 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 FOXN1O15353 648 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 STAM2O75886 525 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 BMP15O95972 392 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CCNE2O96020 404 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF865P0CJ78 1059 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SELPP16109 830 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 UBA1P22314 1058 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ICAM3P32942 547 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ADCYAP1R1P41586 468 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SETQ01105 290 aaPredicted RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 KIF22Q14807 665 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 PWP2Q15269 919 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SPRED3Q2MJR0 410 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 OLFML2BQ68BL8 750 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ADALQ6DHV7 355 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CCDC62Q6P9F0 684 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SV2BQ7L1I2 683 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 OTOP1Q7RTM1 612 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ERMP1Q7Z2K6 904 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 TRPV1Q8NER1 839 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LRRC15Q8TF66 581 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 COPS5Q92905 334 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ERO1AQ96HE7 468 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 FAM20AQ96MK3 541 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 NAP1L4Q99733 375 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF577Q9BSK1 485 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 MMTAG2Q9BU76 263 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 PANK2Q9BZ23 570 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CEP44Q9C0F1 390 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SMG9Q9H0W8 520 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 GOLPH3LQ9H4A5 285 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF576Q9H609 170 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 DDX41Q9UJV9 622 aaKnown RBP5.31□□□□□ -1.56
SF3B1-208ENST00000470268 PCDHA12Q9UN75 941 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 CEP131Q9UPN4 1083 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 SYNGAP1Q96PV0 1343 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 LRRC37A2A6NM11 1700 aa5.31□□□□□ -1.56
SF3B1-208ENST00000470268 A0A1B0GVL5 298 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 DDX39AO00148 427 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 MAFGO15525 162 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CHMP2AO43633 222 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CUTAO60888 179 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 HSPA8P11142 646 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 LIG1P18858 919 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ACVR2BQ13705 512 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CCDC144BQ3MJ40 725 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 GNPTABQ3T906 1256 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 LRCH2Q5VUJ6 765 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 PSAPL1Q6NUJ1 521 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CAVIN1Q6NZI2 390 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 CYFIP1Q7L576 1253 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 NLRX1Q86UT6 975 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 DHX37Q8IY37 1157 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 MSL3Q8N5Y2 521 aaKnown RBP5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ASAP3Q8TDY4 903 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 FERMT2Q96AC1 680 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 RSRP1Q9BUV0 290 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 UNC45AQ9H3U1 944 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 ABHD16BQ9H3Z7 469 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 SLC5A4Q9NY91 659 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 GGT7Q9UJ14 662 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 TRIM17Q9Y577 477 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 MYH15Q9Y2K3 1946 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 DOCK3Q8IZD9 2030 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 A0A087WWV3 80 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 A0A1W2PQ27 194 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 A0A1W2PQ64 194 aa5.3□□□□□ -1.56
SF3B1-208ENST00000470268 A0A1W2PQD8 194 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms