RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TMCO2Q7Z6W1 182 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-209ENST00000469852 NELFCDQ8IXH7 590 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 SLC17A8Q8NDX2 589 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 ZNF507Q8TCN5 953 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 HVCN1Q96D96 273 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 MRPL4Q9BYD3 311 aaKnown RBP16.23■□□□□ 0.19
COL9A3-209ENST00000469852 TSPYL2Q9H2G4 693 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-209ENST00000469852 PTPRHQ9HD43 1115 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 RGS18Q9NS28 235 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 PCDHB13Q9Y5F0 798 aa16.23■□□□□ 0.19
COL9A3-209ENST00000469852 C9IYK1 514 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 EIF3DO15371 548 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 PIGRP01833 764 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 CD44P16070 742 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 IBSPP21815 317 aaPredicted RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 PROZP22891 400 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 AXLP30530 894 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 WDR5P61964 334 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 BMT2Q1RMZ1 405 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 CCDC183Q5T5S1 534 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 TWF2Q6IBS0 349 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 NOTUMQ6P988 496 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 RBM43Q6ZSC3 357 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 HERVK_113Q902F9 699 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 CCDC47Q96A33 483 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 ACCSQ96QU6 501 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 FTHL17Q9BXU8 183 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 UBE2OQ9C0C9 1292 aaKnown RBP16.22■□□□□ 0.19
COL9A3-209ENST00000469852 CHST12Q9NRB3 414 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 RMND1Q9NWS8 449 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 TNFSF13BQ9Y275 285 aa16.22■□□□□ 0.19
COL9A3-209ENST00000469852 TTC3P53804 2025 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ABHD14A-ACY1A0A1B0GW23 586 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ZBBXA8MT70 800 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 HNRNPDLO14979 420 aaKnown RBP16.21■□□□□ 0.19
COL9A3-209ENST00000469852 TGFB1I1O43294 461 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 NPTXRO95502 500 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ACTN1P12814 892 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ZSCAN20P17040 1043 aaPredicted RBP16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ATF7P17544 494 aaPredicted RBP16.21■□□□□ 0.19
COL9A3-209ENST00000469852 PTMSP20962 102 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ALCAMQ13740 583 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 TMEM132AQ24JP5 1023 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ZNF658Q5TYW1 1059 aaPredicted RBP16.21■□□□□ 0.19
COL9A3-209ENST00000469852 RASIP1Q5U651 963 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 SLC27A1Q6PCB7 646 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ZPBP2Q6X784 338 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ZBTB33Q86T24 672 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 SMG8Q8ND04 991 aaKnown RBP16.21■□□□□ 0.19
COL9A3-209ENST00000469852 BICD1Q96G01 975 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 CDT1Q9H211 546 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 ANKFY1Q9P2R3 1169 aa16.21■□□□□ 0.19
COL9A3-209ENST00000469852 COL4A6Q14031 1691 aa16.21■□□□□ 0.18
COL9A3-209ENST00000469852 COL6A3P12111 3177 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 LAMA2P24043 3122 aaKnown RBP16.2■□□□□ 0.18
COL9A3-209ENST00000469852 MEIS3P2A8K0S8 358 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 N4BP3O15049 544 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 BAIAP3O94812 1187 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 SCP2P22307 547 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 ADSSP30520 456 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 PRCPP42785 496 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 LIG4P49917 911 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 MYOCDQ8IZQ8 938 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 CRIPAKQ8N1N5 446 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 CEP120Q8N960 986 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 ZSWIM2Q8NEG5 633 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 RNF39Q9H2S5 420 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 KCTD10Q9H3F6 313 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 NXF3Q9H4D5 531 aaKnown RBP16.2■□□□□ 0.18
COL9A3-209ENST00000469852 FAM105AQ9NUU6 356 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 HES2Q9Y543 173 aa16.2■□□□□ 0.18
COL9A3-209ENST00000469852 UBE4BO95155 1302 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 A0A0U1RQF3 1178 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 TOM1L1O75674 476 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 HARSP12081 509 aaKnown RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 ABCD1P33897 745 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 FAM189BP81408 668 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 NCBP1Q09161 790 aaKnown RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 KNOP1Q1ED39 458 aaKnown RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 ZNF568Q3ZCX4 644 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 SEZ6Q53EL9 994 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 FAM109BQ6ICB4 259 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 MPZL3Q6UWV2 235 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 STXBP4Q6ZWJ1 553 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 SLC24A5Q71RS6 500 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 ZNF598Q86UK7 904 aaKnown RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 ECHDC2Q86YB7 292 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 TMEM192Q8IY95 271 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 SYCP3Q8IZU3 236 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 ADSSL1Q8N142 457 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 GUF1Q8N442 669 aaKnown RBP16.19■□□□□ 0.18
COL9A3-209ENST00000469852 LPPQ93052 612 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 CCDC51Q96ER9 411 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 TRAIPQ9BWF2 469 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 IPPQ9Y573 584 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 PCDHB2Q9Y5E7 798 aa16.19■□□□□ 0.18
COL9A3-209ENST00000469852 GBF1Q92538 1859 aa16.18■□□□□ 0.18
COL9A3-209ENST00000469852 PPP1R3GB7ZBB8 358 aa16.18■□□□□ 0.18
COL9A3-209ENST00000469852 MEFVO15553 781 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-209ENST00000469852 FAM189A1O60320 539 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms