RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CTNND1O60716 968 aaKnown RBP20.62■□□□□ 0.89
VIM-203ENST00000469543 NR3C2P08235 984 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 IRX5P78411 483 aaPredicted RBP20.62■□□□□ 0.89
VIM-203ENST00000469543 GUCY1A3Q02108 690 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 FSTL1Q12841 308 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 MESDQ14696 234 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 SNRNP48Q6IEG0 339 aaKnown RBP20.62■□□□□ 0.89
VIM-203ENST00000469543 C10orf67Q8IYJ2 551 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 ZDHHC14Q8IZN3 488 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 TAS1R2Q8TE23 839 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 CEP170P1Q96L14 293 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 GOLGA8KD6RF30 607 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 CES2O00748 559 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 GMPSP49915 693 aaPredicted RBP20.62■□□□□ 0.89
VIM-203ENST00000469543 TATDN2Q93075 761 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 GRIN2DO15399 1336 aa20.62■□□□□ 0.89
VIM-203ENST00000469543 WDR64B1ANS9 1081 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 EPS8L1Q8TE68 723 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 CNOT7Q9UIV1 285 aaKnown RBP20.61■□□□□ 0.89
VIM-203ENST00000469543 RRP15Q9Y3B9 282 aaKnown RBP20.61■□□□□ 0.89
VIM-203ENST00000469543 TCRBV7S2A1N4TA0A589 114 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 ZBED4O75132 1171 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 CYFIP1Q7L576 1253 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 NIPA1Q7RTP0 329 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 MYO1CO00159 1063 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 SHOX2O60902 331 aaPredicted RBP20.61■□□□□ 0.89
VIM-203ENST00000469543 RPS6KA5O75582 802 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 ANXA13P27216 316 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 HPDP32754 393 aaPredicted RBP20.61■□□□□ 0.89
VIM-203ENST00000469543 CCT5P48643 541 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 NCKAP1LP55160 1127 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 VSIG10LQ86VR7 867 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 PARD3BQ8TEW8 1205 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 WRNIP1Q96S55 665 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 KMT5AQ9NQR1 393 aa20.61■□□□□ 0.89
VIM-203ENST00000469543 NCANO14594 1321 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 DOCK5Q9H7D0 1870 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 CETN1Q12798 172 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 SRLQ86TD4 932 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 BCAS4Q8TDM0 211 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 ZNF526Q8TF50 670 aaPredicted RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 MOV10L1Q9BXT6 1211 aaKnown RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 NOCTQ9UK39 431 aaKnown RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 TULP2O00295 520 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 SSTR3P32745 418 aaPredicted RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 WNT7BP56706 349 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 BACE1P56817 501 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 POU5F1Q01860 360 aaKnown RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 SCARA3Q6AZY7 606 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 LLGL2Q6P1M3 1020 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 NLRX1Q86UT6 975 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 WHAMMQ8TF30 809 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 UBLCP1Q8WVY7 318 aaPredicted RBP20.6■□□□□ 0.89
VIM-203ENST00000469543 C18orf8Q96DM3 657 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 PCDHA10Q9Y5I2 948 aa20.6■□□□□ 0.89
VIM-203ENST00000469543 LYPLA2O95372 231 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 SP2Q02086 613 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 TMEM132BQ14DG7 1078 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 CCDC60Q8IWA6 550 aaPredicted RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 TEX2Q8IWB9 1127 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 POMGNT1Q8WZA1 660 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 CALR3Q96L12 384 aaKnown RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 CWC15Q9P013 229 aaKnown RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 DCDC2CA8MYV0 355 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 CCDC172P0C7W6 258 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 COMTP21964 271 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 HSPA9P38646 679 aaKnown RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 DMP1Q13316 513 aaPredicted RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 DALRD3Q5D0E6 543 aaKnown RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 UBAP2Q5T6F2 1119 aaKnown RBP20.59■□□□□ 0.89
VIM-203ENST00000469543 DAB2IPQ5VWQ8 1189 aa20.59■□□□□ 0.89
VIM-203ENST00000469543 BCCIPQ9P287 314 aaKnown RBP eCLIP20.59■□□□□ 0.89
VIM-203ENST00000469543 IVLP07476 585 aa20.58■□□□□ 0.89
VIM-203ENST00000469543 CTNNA1P35221 906 aaKnown RBP20.58■□□□□ 0.89
VIM-203ENST00000469543 GHRHRQ02643 423 aa20.58■□□□□ 0.89
VIM-203ENST00000469543 SV2AQ7L0J3 742 aa20.58■□□□□ 0.89
VIM-203ENST00000469543 FAM71AQ8IYT1 594 aa20.58■□□□□ 0.89
VIM-203ENST00000469543 FAM213AQ9BRX8 229 aa20.58■□□□□ 0.89
VIM-203ENST00000469543 HNRNPDLO14979 420 aaKnown RBP20.58■□□□□ 0.88
VIM-203ENST00000469543 FMO1Q01740 532 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 MYBPC2Q14324 1141 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 MREGQ8N565 214 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 HELQQ8TDG4 1101 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 TRIM7Q9C029 511 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 XPNPEP1Q9NQW7 623 aa20.58■□□□□ 0.88
VIM-203ENST00000469543 ZNF214Q9UL59 606 aaPredicted RBP20.58■□□□□ 0.88
VIM-203ENST00000469543 H0YGN5 161 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 PPFIA4O75335 1185 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 STBD1O95210 358 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 MAPTP10636 758 aaKnown RBP20.57■□□□□ 0.88
VIM-203ENST00000469543 PTPRAP18433 802 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 SMTNP53814 917 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 GPC5P78333 572 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 TNFAIP1Q13829 316 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 SEPT9Q9UHD8 586 aaPredicted RBP20.57■□□□□ 0.88
VIM-203ENST00000469543 NFS1Q9Y697 457 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 CCDC188H7C350 402 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 PYGMP11217 842 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 CYP11B1P15538 503 aa20.57■□□□□ 0.88
VIM-203ENST00000469543 KCNA2P16389 499 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms