RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 BNIP3Q12983 259 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SPP2Q13103 211 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CUL4AQ13619 759 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 OTUD7BQ6GQQ9 843 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ZNF574Q6ZN55 896 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 KCTD1Q719H9 257 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 RASGRP2Q7LDG7 609 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SPRED2Q7Z698 418 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ADAT2Q7Z6V5 191 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SGMS1Q86VZ5 419 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SIAH1Q8IUQ4 282 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SCYL3Q8IZE3 742 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SPICE1Q8N0Z3 855 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 FBXL16Q8N461 479 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 FIBCD1Q8N539 461 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 C2orf69Q8N8R5 385 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ST13P5Q8NFI4 369 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ANKS1AQ92625 1134 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 GTF3C6Q969F1 213 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 MKL1Q969V6 931 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 TCTN2Q96GX1 697 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 RCC1LQ96I51 464 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 FGD4Q96M96 766 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 NUP88Q99567 741 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 FEZ1Q99689 392 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 APBA2Q99767 749 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 MTA3Q9BTC8 594 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 CCDC113Q9H0I3 377 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 AS3MTQ9HBK9 375 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 PAK6Q9NQU5 681 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 RBM28Q9NW13 759 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 LMCD1Q9NZU5 365 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 NYAP2Q9P242 653 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ORC3Q9UBD5 711 aaPredicted RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 ZNF112Q9UJU3 913 aa4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 SF3B6Q9Y3B4 125 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 POLR2AP24928 1970 aaKnown RBP4.7□□□□□ -1.66
TMEM39A-204ENST00000468545 DDX60LQ5H9U9 1706 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 KRTAP9-6A0A140TA67 174 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CCDC196A0A1B0GTZ2 297 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 PTPDC1A2A3K4 754 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 VPS37CA5D8V6 355 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 WASH4PA8MWX3 477 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 TMEM232C9JQI7 657 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 KLRF2D3W0D1 207 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 H3BQV1 296 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CDKL5O76039 1030 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CTDNEP1O95476 244 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 NDUFB10O96000 172 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 ESR1P03372 595 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GSNP06396 782 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 SLC1A4P43007 532 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CTSKP43235 329 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 NT5C2P49902 561 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GNAQP50148 359 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 EVCP57679 992 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 PCBP3P57721 371 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 TROAPQ12815 778 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GRM1Q13255 1194 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 VGLL4Q14135 290 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GRM4Q14833 912 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 SLC10A6Q3KNW5 377 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 KIAA1755Q5JYT7 1200 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 FAM83BQ5T0W9 1011 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 MCTP1Q6DN14 999 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 RNF111Q6ZNA4 994 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GADL1Q6ZQY3 521 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 HOMER1Q86YM7 354 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CREG2Q8IUH2 290 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 ANKRD13AQ8IZ07 590 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 SRBD1Q8N5C6 995 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 ZNF513Q8N8E2 541 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 AGBL5Q8NDL9 886 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 NSUN7Q8NE18 718 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 ADCY4Q8NFM4 1077 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 ZNF669Q96BR6 464 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 INTS4Q96HW7 963 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CLMNQ96JQ2 1002 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 NOL6Q9H6R4 1146 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 GBA2Q9HCG7 927 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CWC22Q9HCG8 908 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 APEX2Q9UBZ4 518 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 CGGBP1Q9UFW8 167 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 MAD2L2Q9UI95 211 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 DIS3Q9Y2L1 958 aaKnown RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 TMX2Q9Y320 296 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 PCDHA11Q9Y5I1 949 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 WDR90Q96KV7 1748 aa4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 COL2A1P02458 1487 aaPredicted RBP4.69□□□□□ -1.66
TMEM39A-204ENST00000468545 LAMB1P07942 1786 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 SCN4AP35499 1836 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 FOCADQ5VW36 1801 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 H0Y8X5 98 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 AGRPO00253 132 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 MEIS1O00470 390 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 PDPK1O15530 556 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 PRPF3O43395 683 aaKnown RBP4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 ADAMTS4O75173 837 aa4.68□□□□□ -1.66
TMEM39A-204ENST00000468545 PDHBP11177 359 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms