RNA–Protein interactions for RNA: ENST00000466624.1

GPC1-207, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 782 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-207ENST00000466624 ZNF658Q5TYW1 1059 aaPredicted RBP17.55■□□□□ 0.4
GPC1-207ENST00000466624 TWF2Q6IBS0 349 aaKnown RBP17.55■□□□□ 0.4
GPC1-207ENST00000466624 SLC24A5Q71RS6 500 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 OTOP2Q7RTS6 562 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 APBB1IPQ7Z5R6 666 aaPredicted RBP17.55■□□□□ 0.4
GPC1-207ENST00000466624 TRIML1Q8N9V2 468 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 ERCC4Q92889 916 aaPredicted RBP17.55■□□□□ 0.4
GPC1-207ENST00000466624 CPB2Q96IY4 423 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 PRO3102Q9H379 93 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 PDZD7Q9H5P4 517 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 PTPRHQ9HD43 1115 aa17.55■□□□□ 0.4
GPC1-207ENST00000466624 A0A0U1RQF3 1178 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 HNRNPDLO14979 420 aaKnown RBP17.54■□□□□ 0.4
GPC1-207ENST00000466624 ZNF623O75123 536 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 TOM1L1O75674 476 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 AMHP03971 560 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 KCNJ6P48051 423 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 FAM189BP81408 668 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 DCAF4L1Q3SXM0 396 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 UBXN11Q5T124 520 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 CCDC183Q5T5S1 534 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 RBM43Q6ZSC3 357 aaKnown RBP17.54■□□□□ 0.4
GPC1-207ENST00000466624 GLIS3Q8NEA6 775 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 SCFD1Q8WVM8 642 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 ADPGKQ9BRR6 497 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 TARS2Q9BW92 718 aaKnown RBP17.54■□□□□ 0.4
GPC1-207ENST00000466624 ELAC1Q9H777 363 aaKnown RBP17.54■□□□□ 0.4
GPC1-207ENST00000466624 MAN1B1Q9UKM7 699 aa17.54■□□□□ 0.4
GPC1-207ENST00000466624 ABLIM1O14639 778 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 PRPF6O94906 941 aaKnown RBP17.53■□□□□ 0.4
GPC1-207ENST00000466624 PPP1R2P41236 205 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 LIG4P49917 911 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 SNRPFP62306 86 aaKnown RBP17.53■□□□□ 0.4
GPC1-207ENST00000466624 MORC3Q14149 939 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 SHHQ15465 462 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 TMEM132AQ24JP5 1023 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 C9orf50Q5SZB4 431 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 PRPF38BQ5VTL8 546 aaKnown RBP17.53■□□□□ 0.4
GPC1-207ENST00000466624 MPZL3Q6UWV2 235 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 MYOCDQ8IZQ8 938 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 CRIPAKQ8N1N5 446 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 GUF1Q8N442 669 aaKnown RBP17.53■□□□□ 0.4
GPC1-207ENST00000466624 PHOSPHO2Q8TCD6 241 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 SYAP1Q96A49 352 aaPredicted RBP17.53■□□□□ 0.4
GPC1-207ENST00000466624 BICD1Q96G01 975 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 SLC9A7Q96T83 725 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 FAM105AQ9NUU6 356 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 STYXL1Q9Y6J8 313 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 ZMYM2Q9UBW7 1377 aa17.53■□□□□ 0.4
GPC1-207ENST00000466624 A0A1W2PPC1 479 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 ZBBXA8MT70 800 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 EOMESO95936 686 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 MCF2P10911 925 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 HOXD13P35453 343 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 MCL1Q07820 350 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 KCNA1Q09470 495 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 NFKBIBQ15653 356 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 KNOP1Q1ED39 458 aaKnown RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 EEF1DP3Q658K8 133 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 SLFN12LQ6IEE8 588 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.52■□□□□ 0.4
GPC1-207ENST00000466624 MRPL10Q7Z7H8 261 aaKnown RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 ZNF598Q86UK7 904 aaKnown RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 ECHDC2Q86YB7 292 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 NPAS4Q8IUM7 802 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 TOP1MTQ969P6 601 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 RNPC3Q96LT9 517 aaKnown RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 GBP3Q9H0R5 595 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 TMEM161AQ9NX61 479 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 CXXC1Q9P0U4 656 aaPredicted RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 CGNQ9P2M7 1197 aaKnown RBP17.52■□□□□ 0.4
GPC1-207ENST00000466624 GDAQ9Y2T3 454 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 SLC4A7Q9Y6M7 1214 aa17.52■□□□□ 0.4
GPC1-207ENST00000466624 CITO14578 2027 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 CLDN3O15551 220 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 STAG3L1P0CL83 205 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 NOLC1Q14978 699 aaKnown RBP eCLIP17.51■□□□□ 0.39
GPC1-207ENST00000466624 ZNF568Q3ZCX4 644 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 FNDC1Q4ZHG4 1894 aaPredicted RBP17.51■□□□□ 0.39
GPC1-207ENST00000466624 SLC39A4Q6P5W5 647 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 CHRDL2Q6WN34 429 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 TDHQ8IZJ6 230 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 SYCP3Q8IZU3 236 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 RSPH1Q8WYR4 309 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 EIF2AQ9BY44 585 aaKnown RBP17.51■□□□□ 0.39
GPC1-207ENST00000466624 TRIM6Q9C030 488 aaPredicted RBP17.51■□□□□ 0.39
GPC1-207ENST00000466624 CDT1Q9H211 546 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 TMEM63CQ9P1W3 806 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 USP20Q9Y2K6 914 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 PCDHB2Q9Y5E7 798 aa17.51■□□□□ 0.39
GPC1-207ENST00000466624 RALGAPA2Q2PPJ7 1873 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 RBAK-RBAKDNI3L0D1 243 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 NPTXRO95502 500 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 ATF7P17544 494 aaPredicted RBP17.5■□□□□ 0.39
GPC1-207ENST00000466624 GARTP22102 1010 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 DEFB103AP81534 67 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 KYAT1Q16773 422 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 CDR2LQ86X02 465 aaPredicted RBP17.5■□□□□ 0.39
GPC1-207ENST00000466624 HACE1Q8IYU2 909 aa17.5■□□□□ 0.39
GPC1-207ENST00000466624 SMG8Q8ND04 991 aaKnown RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms