RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 HSPH1Q92598 858 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 RPF1Q9H9Y2 349 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 ATP6V0A4Q9HBG4 840 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 CCT8L1PA6NM43 557 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 TTLL6Q8N841 843 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 HEXIM2Q96MH2 286 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 DNAJC7Q99615 494 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 ZNF189O75820 626 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 TDP2O95551 362 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 ZBED8Q8IZ13 594 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 GFM2Q969S9 779 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 ALKBH8Q96BT7 664 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 L1RE1Q9UN81 338 aa20.2■□□□□ 0.82
CCDC88B-204ENST00000463837 FGFR4P22455 802 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 SBK1Q52WX2 424 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 MAP3K14Q99558 947 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 C11orf70Q9BRQ4 267 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 RAD51CO43502 376 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 EEF1DP29692 281 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 ZNF667Q5HYK9 610 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 TUFT1Q9NNX1 390 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 SNAP23O00161 211 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 KITP10721 976 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 LRRC31Q6UY01 552 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 PNKPQ96T60 521 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 KIFC3Q9BVG8 833 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 ABCB11O95342 1321 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 ASAP2O43150 1006 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 P4HBP07237 508 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 HNRNPH1P31943 449 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 KRT76Q01546 638 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 HP1BP3Q5SSJ5 553 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 RGS9BPQ6ZS82 235 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 APLFQ8IW19 511 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 ICA1LQ8NDH6 482 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 IQGAP1P46940 1657 aa20.19■□□□□ 0.82
CCDC88B-204ENST00000463837 SPDYE16A6NNV3 312 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L15C9J2P7 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L13C9JLJ4 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L11C9JVI0 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L18D6R9N7 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L22D6RA61 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L17D6RBQ6 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L19D6RCP7 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L20D6RJB6 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 ABL1P00519 1130 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SFNP31947 248 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SNAP25P60880 206 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 CDK17Q00537 523 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L24Q0WX57 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SPDYE2Q495Y8 402 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L6PQ6QN14 398 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 TRABDQ9H4I3 376 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SUCLA2Q9P2R7 463 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 HPSEQ9Y251 543 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 GSTA4O15217 222 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SCARA5Q6ZMJ2 495 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 RIBC1Q8N443 379 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SLC35G2Q8TBE7 412 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 IL17RAQ96F46 866 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 TTC1Q99614 292 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 DNAJC5Q9H3Z4 198 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 ARHGEF37A1IGU5 675 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 UCHL3P15374 230 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 ZBTB33Q86T24 672 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 NUDCD3Q8IVD9 361 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 RNF25Q96BH1 459 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 VPS39Q96JC1 886 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SLC40A1Q9NP59 571 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP32Q8NFA0 1604 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 USP17L10C9JJH3 530 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 CHEK2O96017 543 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 COPS2P61201 443 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 LCA5Q86VQ0 697 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 KCTD17Q8N5Z5 321 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 GIPC2Q8TF65 315 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 MOV10L1Q9BXT6 1211 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 LRRC4Q9HBW1 653 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 SUFUQ9UMX1 484 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 HPS5Q9UPZ3 1129 aa20.18■□□□□ 0.82
CCDC88B-204ENST00000463837 CFAP69A5D8W1 941 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 EPHB1P54762 984 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 GALCP54803 685 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 SLC12A1Q13621 1099 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PTPAQ15257 358 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ZNF746Q6NUN9 644 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 MASTLQ96GX5 879 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PHF20L1A8MW92 1017 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PAPD7Q5XG87 772 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 TMEM270Q6UE05 265 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 TIPINQ9BVW5 301 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ERCC6L2Q5T890 1561 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ZBBXA8MT70 800 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 RAD17O75943 681 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 ARL13BQ3SXY8 428 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 C1orf54Q8WWF1 131 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PRPF31Q8WWY3 499 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 APEX2Q9UBZ4 518 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 RPS6KA4O75676 772 aa20.17■□□□□ 0.82
CCDC88B-204ENST00000463837 PAMP19021 973 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms