RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 NEMFO60524 1076 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 TSPAN1O60635 241 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 SLITRK3O94933 977 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 LYPLA2O95372 231 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 BRD1O95696 1058 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 SOD2P04179 222 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 CNPP09543 421 aaKnown RBP17.11■□□□□ 0.33
SKA3-204ENST00000462482 POU5F1BQ06416 359 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 COLEC11Q9BWP8 271 aa17.11■□□□□ 0.33
SKA3-204ENST00000462482 ARL5CA6NH57 179 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 ZBTB39O15060 712 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 ASGR2P07307 311 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 MLH1P40692 756 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 TXKP42681 527 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 GLUD2P49448 558 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 CLCN4P51793 760 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 SPIRE1Q08AE8 756 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 TCF15Q12870 199 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 EARS2Q5JPH6 523 aaKnown RBP17.1■□□□□ 0.33
SKA3-204ENST00000462482 KANK3Q6NY19 840 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 C15orf39Q6ZRI6 1047 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 NECAB1Q8N987 351 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 SMG8Q8ND04 991 aaKnown RBP17.1■□□□□ 0.33
SKA3-204ENST00000462482 CPB2Q96IY4 423 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 RPS6KC1Q96S38 1066 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 GAD1Q99259 594 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 HERC2P3Q9BVR0 1158 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 APOL6Q9BWW8 343 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 VN1R3Q9BXE9 311 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 TTC12Q9H892 705 aaPredicted RBP17.1■□□□□ 0.33
SKA3-204ENST00000462482 GIT1Q9Y2X7 761 aa17.1■□□□□ 0.33
SKA3-204ENST00000462482 TECTAO75443 2155 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 FAM205CA6NFA0 338 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 B4GALT3O60512 393 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 CTDNEP1O95476 244 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 GLUD1P00367 558 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 AFF1P51825 1210 aaKnown RBP17.09■□□□□ 0.33
SKA3-204ENST00000462482 SAFBQ15424 915 aaKnown RBP eCLIP17.09■□□□□ 0.33
SKA3-204ENST00000462482 IFNLR1Q8IU57 520 aaPredicted RBP17.09■□□□□ 0.33
SKA3-204ENST00000462482 DIS3L2Q8IYB7 885 aaKnown RBP17.09■□□□□ 0.33
SKA3-204ENST00000462482 STAMQ92783 540 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 HSD17B14Q9BPX1 270 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 EIF2AQ9BY44 585 aaKnown RBP17.09■□□□□ 0.33
SKA3-204ENST00000462482 XPNPEP1Q9NQW7 623 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 MAN1C1Q9NR34 630 aa17.09■□□□□ 0.33
SKA3-204ENST00000462482 GALR2O43603 387 aaPredicted RBP17.08■□□□□ 0.32
SKA3-204ENST00000462482 DTNBO60941 627 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 PDGFBP01127 241 aaPredicted RBP17.08■□□□□ 0.32
SKA3-204ENST00000462482 XRCC6P12956 609 aaKnown RBP eCLIP17.08■□□□□ 0.32
SKA3-204ENST00000462482 SCNN1GP51170 649 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 MBTD1Q05BQ5 628 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 CAPSQ13938 189 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 TMEM132AQ24JP5 1023 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 SLC27A1Q6PCB7 646 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 CYP26C1Q6V0L0 522 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 COLGALT2Q8IYK4 626 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 ASAP3Q8TDY4 903 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 GTF3C6Q969F1 213 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 PHOX2BQ99453 314 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 NFKBIZQ9BYH8 718 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 POLR3FQ9H1D9 316 aaPredicted RBP17.08■□□□□ 0.32
SKA3-204ENST00000462482 RNF39Q9H2S5 420 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 PARP2Q9UGN5 583 aa17.08■□□□□ 0.32
SKA3-204ENST00000462482 BTBD18B2RXH4 712 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 INPPL1O15357 1258 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 ST18O60284 1047 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 USO1O60763 962 aaKnown RBP17.07■□□□□ 0.32
SKA3-204ENST00000462482 LILRB3O75022 631 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 FDPSP14324 419 aaKnown RBP17.07■□□□□ 0.32
SKA3-204ENST00000462482 ARL2P36404 184 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 RARRES1P49788 294 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 FOSBP53539 338 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 CREMQ03060 361 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 TDGQ13569 410 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 ASTLQ6HA08 431 aaPredicted RBP17.07■□□□□ 0.32
SKA3-204ENST00000462482 ZBTB8OSQ8IWT0 167 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 CMASQ8NFW8 434 aaPredicted RBP17.07■□□□□ 0.32
SKA3-204ENST00000462482 ERMNQ8TAM6 284 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 PIGOQ8TEQ8 1089 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 TNFRSF25Q93038 417 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 ZFP42Q96MM3 310 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.07■□□□□ 0.32
SKA3-204ENST00000462482 FAM86C1Q9NVL1 165 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 FBXL21Q9UKT6 434 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 HES2Q9Y543 173 aa17.07■□□□□ 0.32
SKA3-204ENST00000462482 CCDC195A0A1B0GUA6 201 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 LRRIQ4A6NIV6 560 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 H0Y858 1186 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 TEX28O15482 410 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 NPTXRO95502 500 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 ARF4P18085 180 aaPredicted RBP17.06■□□□□ 0.32
SKA3-204ENST00000462482 ATP2B1P20020 1258 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 GLRA2P23416 452 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 GBP2P32456 591 aaPredicted RBP17.06■□□□□ 0.32
SKA3-204ENST00000462482 DSC1Q08554 894 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 ME3Q16798 604 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 MCPH1Q8NEM0 835 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 HDAC7Q8WUI4 952 aa17.06■□□□□ 0.32
SKA3-204ENST00000462482 NXF3Q9H4D5 531 aaKnown RBP17.06■□□□□ 0.32
SKA3-204ENST00000462482 PIDD1Q9HB75 910 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms