RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 K7ERI5 159 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 MAPTP10636 758 aaKnown RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 FGFR1P11362 822 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 GAP43P17677 238 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 PPM1AP35813 382 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 BMPR1AP36894 532 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 GIT2Q14161 759 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 PTPROQ16827 1216 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 FOXD4L6Q3SYB3 417 aaPredicted RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 PAN2Q504Q3 1202 aaKnown RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 SHC4Q6S5L8 630 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 FOXD4L3Q6VB84 417 aaPredicted RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 IQUBQ8NA54 791 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 TMEM161BQ8NDZ6 487 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 URGCPQ8TCY9 931 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 LEO1Q8WVC0 666 aaPredicted RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 CPB2Q96IY4 423 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 KIFC3Q9BVG8 833 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 MRPL4Q9BYD3 311 aaKnown RBP13.05□□□□□ -0.32
VPS52-213ENST00000461743 ST6GALNAC4Q9H4F1 302 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 PDZD7Q9H5P4 517 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 RSAD1Q9HA92 442 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 KANSL3Q9P2N6 904 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 TNFSF13BQ9Y275 285 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 IPPQ9Y573 584 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 MYO7AQ13402 2215 aa13.05□□□□□ -0.32
VPS52-213ENST00000461743 A0A087X0B3 334 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 FRMD3A2A2Y4 597 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 RBAK-RBAKDNI3L0D1 243 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 B4GALT5O43286 388 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 LPXNO60711 386 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 ITGA4P13612 1032 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 IBSPP21815 317 aaPredicted RBP13.04□□□□□ -0.32
VPS52-213ENST00000461743 GATMP50440 423 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 AMPD3Q01432 767 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 UBE3AQ05086 875 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 RAD51AP2Q09MP3 1159 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 STRN3Q13033 797 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 TMEM132AQ24JP5 1023 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 ATF7IP2Q5U623 682 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 ADALQ6DHV7 355 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 CNNM4Q6P4Q7 775 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 RNF169Q8NCN4 708 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 SMG8Q8ND04 991 aaKnown RBP13.04□□□□□ -0.32
VPS52-213ENST00000461743 HELQQ8TDG4 1101 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 GDPD5Q8WTR4 605 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 HVCN1Q96D96 273 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 EIF2AQ9BY44 585 aaKnown RBP13.04□□□□□ -0.32
VPS52-213ENST00000461743 CERS4Q9HA82 394 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 KBTBD4Q9NVX7 518 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 USP25Q9UHP3 1055 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 GIT1Q9Y2X7 761 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 PCDHB12Q9Y5F1 795 aa13.04□□□□□ -0.32
VPS52-213ENST00000461743 K7ENM7 598 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 SLC16A4O15374 487 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 TRAK2O60296 914 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 NPTXRO95502 500 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 EDN1P05305 212 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 CMA1P23946 247 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 GPM6BQ13491 265 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 ALCAMQ13740 583 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 ADGRE1Q14246 886 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 DHX8Q14562 1220 aaKnown RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 TIGD5Q53EQ6 642 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 NOMO2Q5JPE7 1267 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 SPOUT1Q5T280 376 aaKnown RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 ZPBP2Q6X784 338 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 AGMOQ6ZNB7 445 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 TAS1R3Q7RTX0 852 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 SPRED2Q7Z698 418 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 FAM178BQ8IXR5 827 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 MYCT1Q8N699 235 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 PDILTQ8N807 584 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 COLGALT1Q8NBJ5 622 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 MAFAQ8NHW3 353 aaPredicted RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 DDX12PQ92771 950 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 DNAJC19Q96DA6 116 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 MRPL38Q96DV4 380 aaKnown RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 ACO2Q99798 780 aaKnown RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 CWH43Q9H720 699 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 OLFML3Q9NRN5 406 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 STK39Q9UEW8 545 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 MTUS1Q9ULD2 1270 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 LZTS1Q9Y250 596 aa13.03□□□□□ -0.32
VPS52-213ENST00000461743 SPTBN5Q9NRC6 3674 aaKnown RBP13.03□□□□□ -0.32
VPS52-213ENST00000461743 NPHP3-ACAD11A0A0J9YXS1 232 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 FAM237AA0A1B0GTK4 181 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 A0A1W2PQ27 194 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 A0A1W2PQ64 194 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 A0A1W2PQD8 194 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 MYMKA6NI61 221 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 OFD1O75665 1012 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 PIGRP01833 764 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 PROZP22891 400 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 CACNB1Q02641 598 aaPredicted RBP13.02□□□□□ -0.33
VPS52-213ENST00000461743 NT5DC1Q5TFE4 455 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 MPZL3Q6UWV2 235 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 HAUS6Q7Z4H7 955 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 LPPQ93052 612 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 ZNF558Q96NG5 402 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms