RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 FBXO18Q8NFZ0 1043 aa25.28■■□□□ 1.64
PTPN4-207ENST00000460162 ERMNQ8TAM6 284 aa25.28■■□□□ 1.64
PTPN4-207ENST00000460162 CPB2Q96IY4 423 aa25.28■■□□□ 1.64
PTPN4-207ENST00000460162 POLR3CQ9BUI4 534 aaPredicted RBP25.28■■□□□ 1.64
PTPN4-207ENST00000460162 DENND4AQ7Z401 1863 aa25.28■■□□□ 1.64
PTPN4-207ENST00000460162 ARF4P18085 180 aaPredicted RBP25.27■■□□□ 1.64
PTPN4-207ENST00000460162 MLH1P40692 756 aa25.27■■□□□ 1.64
PTPN4-207ENST00000460162 PPFIBP1Q86W92 1011 aa25.27■■□□□ 1.64
PTPN4-207ENST00000460162 TRIM6Q9C030 488 aaPredicted RBP25.27■■□□□ 1.64
PTPN4-207ENST00000460162 FAN1Q9Y2M0 1017 aa25.27■■□□□ 1.64
PTPN4-207ENST00000460162 MED24O75448 989 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 ALDH2P05091 517 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 TRAPPC10P48553 1259 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 RBM25P49756 843 aaKnown RBP25.26■■□□□ 1.63
PTPN4-207ENST00000460162 TTC38Q5R3I4 469 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 TRIM67Q6ZTA4 783 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 NOSTRINQ8IVI9 506 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 FAM184AQ8NB25 1140 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 MFSD14AQ96MC6 490 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 NACC1Q96RE7 527 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 KIF2CQ99661 725 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 KCNH6Q9H252 994 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 NR2E1Q9Y466 385 aa25.26■■□□□ 1.63
PTPN4-207ENST00000460162 ARL5CA6NH57 179 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 NRP1O14786 923 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 RPA1P27694 616 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 MTHFRP42898 656 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 ZXDAP98168 799 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 DSC1Q08554 894 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 GNL2Q13823 731 aaKnown RBP25.25■■□□□ 1.63
PTPN4-207ENST00000460162 HAUS3Q68CZ6 603 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 CDCA2Q69YH5 1023 aaPredicted RBP25.25■■□□□ 1.63
PTPN4-207ENST00000460162 SLC27A1Q6PCB7 646 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 POTEGQ6S5H5 508 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 PPP4R3CPQ6ZMV5 832 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 BMP8AQ7Z5Y6 402 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 COLGALT2Q8IYK4 626 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 SLC22A17Q8WUG5 538 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 PRIMPOLQ96LW4 560 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 RIPOR3Q96MK2 946 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 GAD1Q99259 594 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 EMILIN2Q9BXX0 1053 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 GPRC5CQ9NQ84 441 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 MARCH5Q9NX47 278 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 GIT1Q9Y2X7 761 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 HES2Q9Y543 173 aa25.25■■□□□ 1.63
PTPN4-207ENST00000460162 LRRIQ4A6NIV6 560 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 B4GALT5O43286 388 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 EPCAMP16422 314 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 MUTP22033 750 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 ZNF174Q15697 407 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 PTPN21Q16825 1174 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 C8orf34Q49A92 452 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 KIAA1841Q6NSI8 718 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 HERC2P3Q9BVR0 1158 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 RNF39Q9H2S5 420 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 NXF3Q9H4D5 531 aaKnown RBP25.24■■□□□ 1.63
PTPN4-207ENST00000460162 POMKQ9H5K3 350 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 PRMT7Q9NVM4 692 aaPredicted RBP25.24■■□□□ 1.63
PTPN4-207ENST00000460162 CDH22Q9UJ99 828 aa25.24■■□□□ 1.63
PTPN4-207ENST00000460162 NOL7Q9UMY1 257 aaKnown RBP25.24■■□□□ 1.63
PTPN4-207ENST00000460162 A0A087WWV3 80 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 SOD2P04179 222 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 URODP06132 367 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 SCNN1GP51170 649 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 RARS2Q5T160 578 aaKnown RBP25.23■■□□□ 1.63
PTPN4-207ENST00000460162 ZBTB8OSQ8IWT0 167 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 ZFP42Q96MM3 310 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 APOL6Q9BWW8 343 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 SFXN1Q9H9B4 322 aa25.23■■□□□ 1.63
PTPN4-207ENST00000460162 MRPL17Q9NRX2 175 aaKnown RBP25.23■■□□□ 1.63
PTPN4-207ENST00000460162 PRG3Q9Y2Y8 225 aaPredicted RBP25.23■■□□□ 1.63
PTPN4-207ENST00000460162 A0A1B0GUA9 196 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 TMEM221A6NGB7 291 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 M0R296 226 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 SIGLEC14Q08ET2 396 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 MAEAQ7L5Y9 396 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 CABP7Q86V35 215 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 RNF168Q8IYW5 571 aaPredicted RBP25.22■■□□□ 1.63
PTPN4-207ENST00000460162 KLHL5Q96PQ7 755 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 C2orf40Q9H1Z8 148 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 SSX2IPQ9Y2D8 614 aa25.22■■□□□ 1.63
PTPN4-207ENST00000460162 ARHGEF35A5YM69 484 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 NR1I2O75469 434 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 NPTXRO95502 500 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 SSBP05455 408 aaKnown RBP eCLIP25.21■■□□□ 1.63
PTPN4-207ENST00000460162 SP100P23497 879 aaPredicted RBP25.21■■□□□ 1.63
PTPN4-207ENST00000460162 HOXD11P31277 338 aaPredicted RBP25.21■■□□□ 1.63
PTPN4-207ENST00000460162 OR1G1P47890 313 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 FXR2P51116 673 aaKnown RBP eCLIP25.21■■□□□ 1.63
PTPN4-207ENST00000460162 CLCN4P51793 760 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 FAM187BQ17R55 369 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 PADI6Q6TGC4 694 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 TSHZ2Q9NRE2 1034 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 KMT2EQ8IZD2 1858 aa25.21■■□□□ 1.63
PTPN4-207ENST00000460162 PLXNA3P51805 1871 aa25.2■■□□□ 1.62
PTPN4-207ENST00000460162 LILRB3O75022 631 aa25.2■■□□□ 1.62
PTPN4-207ENST00000460162 EFEMP2O95967 443 aa25.2■■□□□ 1.62
PTPN4-207ENST00000460162 CNPP09543 421 aaKnown RBP25.2■■□□□ 1.62
PTPN4-207ENST00000460162 CYP11B2P19099 503 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms