RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 SMTNP53814 917 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 GTF2BQ00403 316 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 ITGA7Q13683 1181 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 TPD52L1Q16890 204 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 SLC39A4Q6P5W5 647 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 SYCP3Q8IZU3 236 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 DEFB123Q8N688 67 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 DEPTORQ8TB45 409 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 NOC3LQ8WTT2 800 aaKnown RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 LRCH3Q96II8 777 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 ZBTB45Q96K62 511 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 NTPCRQ9BSD7 190 aaKnown RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 TRPV6Q9H1D0 765 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 SUDS3Q9H7L9 328 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 IFT122Q9HBG6 1241 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 ARHGAP28Q9P2N2 729 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 IKBKBO14920 756 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 PPP1R12AO14974 1030 aaPredicted RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 B4GALT5O43286 388 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 CASP4P49662 377 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 DNM2P50570 870 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 BMT2Q1RMZ1 405 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 RDH13Q8NBN7 331 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 PCSK9Q8NBP7 692 aaKnown RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 DIS3LQ8TF46 1054 aaKnown RBP11.29□□□□□ -0.6
USP39-210ENST00000459775 SPIRE2Q8WWL2 714 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 CBWD1Q9BRT8 395 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 KATNAL1Q9BW62 490 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 GTF2IRD1Q9UHL9 959 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 PCDHB13Q9Y5F0 798 aa11.29□□□□□ -0.6
USP39-210ENST00000459775 COL1A2P08123 1366 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 GOLGA8IPA6NC78 632 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 RRN3P2A6NIE6 340 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 GOLGA8JA6NMD2 632 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 MAGEB2O15479 319 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 MSCO60682 206 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 KPNA6O60684 536 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 ZMYND10O75800 440 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 CTSHP09668 335 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 NEFHP12036 1026 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 ZNF18P17022 549 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 ADSSP30520 456 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 HOXC8P31273 242 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 NAMPTP43490 491 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 MRE11P49959 708 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 CYP2J2P51589 502 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 ATN1P54259 1190 aaPredicted RBP11.28□□□□□ -0.6
USP39-210ENST00000459775 RTP1P59025 263 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 SEZ6Q53EL9 994 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 COBLL1Q53SF7 1204 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 LRRC55Q6ZSA7 311 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 EP400NLQ6ZTU2 488 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 TDHQ8IZJ6 230 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 TCP11Q8WWU5 503 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 FAM84AQ96KN4 292 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 SCLT1Q96NL6 688 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 OSMRQ99650 979 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 ARPC5LQ9BPX5 153 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 TARS2Q9BW92 718 aaKnown RBP11.28□□□□□ -0.6
USP39-210ENST00000459775 HAPLN2Q9GZV7 340 aa11.28□□□□□ -0.6
USP39-210ENST00000459775 SMTNL1A8MU46 457 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 INO80B-WBP1J3KQ70 363 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 K7ERI5 159 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 EIF3DO15371 548 aaKnown RBP eCLIP11.27□□□□□ -0.6
USP39-210ENST00000459775 CAVIN2O95810 425 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 GPC3P51654 580 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 CDKAL1Q5VV42 579 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 FAM109BQ6ICB4 259 aaPredicted RBP11.27□□□□□ -0.6
USP39-210ENST00000459775 TMEM40Q8WWA1 233 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 CALR3Q96L12 384 aaKnown RBP11.27□□□□□ -0.6
USP39-210ENST00000459775 GLT1D1Q96MS3 346 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 ACCSQ96QU6 501 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 INO80BQ9C086 356 aaPredicted RBP11.27□□□□□ -0.6
USP39-210ENST00000459775 C17orf75Q9HAS0 396 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 AGPAT3Q9NRZ7 376 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 TRIOBPQ9H2D6 2365 aa11.27□□□□□ -0.6
USP39-210ENST00000459775 EVPLQ92817 2033 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 GPR32O75388 356 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 NR3C1P04150 777 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 VDRP11473 427 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 HARSP12081 509 aaKnown RBP11.27□□□□□ -0.61
USP39-210ENST00000459775 NR2F2P24468 414 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 TMOD1P28289 359 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 CLCN1P35523 988 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 PTENP60484 403 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 ADAM9Q13443 819 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 MXD4Q14582 209 aaPredicted RBP11.27□□□□□ -0.61
USP39-210ENST00000459775 PTGISQ16647 500 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 ZBTB41Q5SVQ8 909 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 CEP135Q66GS9 1140 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 MAP4K3Q8IVH8 894 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 ARRDC4Q8NCT1 418 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 SAAL1Q96ER3 474 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 BICD1Q96G01 975 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 CPB2Q96IY4 423 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 SENP6Q9GZR1 1112 aaPredicted RBP11.27□□□□□ -0.61
USP39-210ENST00000459775 GBP3Q9H0R5 595 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 ADAMTS10Q9H324 1103 aa11.27□□□□□ -0.61
USP39-210ENST00000459775 STARD7Q9NQZ5 370 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms