RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TXKP42681 527 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 HMGN5P82970 282 aaKnown RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 CYP4A11Q02928 519 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 CREMQ03060 361 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 SPIRE1Q08AE8 756 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 NR5A1Q13285 461 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 MTMR3Q13615 1198 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 CTTNQ14247 550 aaKnown RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 ME3Q16798 604 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 PTPN21Q16825 1174 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 SYCE2Q6PIF2 218 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 HFE2Q6ZVN8 426 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 APBB1IPQ7Z5R6 666 aaPredicted RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 CABP7Q86V35 215 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 DIS3L2Q8IYB7 885 aaKnown RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 GPR65Q8IYL9 337 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 FBXL6Q8N531 539 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 VN1R2Q8NFZ6 395 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 OXER1Q8TDS5 423 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 TNFRSF25Q93038 417 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 LPPQ93052 612 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 PRIMPOLQ96LW4 560 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 ZSCAN31Q96LW9 406 aaPredicted RBP7.86□□□□□ -1.15
VPS41-208ENST00000448833 PHF12Q96QT6 1004 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 NACC1Q96RE7 527 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 COLEC11Q9BWP8 271 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 RAB34Q9BZG1 259 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 GBP3Q9H0R5 595 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 CSRNP2Q9H175 543 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 C2orf40Q9H1Z8 148 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 SFXN1Q9H9B4 322 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 TUFT1Q9NNX1 390 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 HCSTQ9UBK5 93 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 GIT1Q9Y2X7 761 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 PCDHGC5Q9Y5F6 944 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 MUC6Q6W4X9 2439 aa7.86□□□□□ -1.15
VPS41-208ENST00000448833 ZNF318Q5VUA4 2279 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 ARL5CA6NH57 179 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 BTBD18B2RXH4 712 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 NRP1O14786 923 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 INPPL1O15357 1258 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 URODP06132 367 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 ADH1AP07327 375 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 ARL2P36404 184 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 TRAPPC10P48553 1259 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 RBM25P49756 843 aaKnown RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 PSEN1P49768 467 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 RARRES1P49788 294 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 PTPN5P54829 565 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 GNL2Q13823 731 aaKnown RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 PPP2R5AQ15172 486 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 KIAA1841Q6NSI8 718 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 SLC27A1Q6PCB7 646 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 AGMOQ6ZNB7 445 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 C15orf39Q6ZRI6 1047 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 ZBTB8OSQ8IWT0 167 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 ZDHHC14Q8IZN3 488 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 NECAB1Q8N987 351 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 NSUN7Q8NE18 718 aaKnown RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 SLC22A17Q8WUG5 538 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 HDAC7Q8WUI4 952 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 MTMR9Q96QG7 549 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 POLR3CQ9BUI4 534 aaPredicted RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 FOXP1Q9H334 677 aaPredicted RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 MINDY3Q9H8M7 445 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 TSHZ2Q9NRE2 1034 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 SH2B1Q9NRF2 756 aaPredicted RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS41-208ENST00000448833 PRMT7Q9NVM4 692 aaPredicted RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 WRAP73Q9P2S5 460 aaPredicted RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 KCNG1Q9UIX4 513 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 DBR1Q9UK59 544 aaKnown RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 NOL7Q9UMY1 257 aaKnown RBP7.85□□□□□ -1.15
VPS41-208ENST00000448833 SORCS3Q9UPU3 1222 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 KIF3AQ9Y496 699 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 TECTAO75443 2155 aa7.85□□□□□ -1.15
VPS41-208ENST00000448833 PHLPP2Q6ZVD8 1323 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 A0A1B0GUA9 196 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 TSPAN1O60635 241 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 POMCP01189 267 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 SOD2P04179 222 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 ATP2B1P20020 1258 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 RPA1P27694 616 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 OR1G1P47890 313 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 SLC11A1P49279 550 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 EFNA5P52803 228 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 RBM10P98175 930 aaKnown RBP7.84□□□□□ -1.15
VPS41-208ENST00000448833 PDIA5Q14554 519 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 PTPN14Q15678 1187 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 LONRF3Q496Y0 759 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 UBXN11Q5T124 520 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 HAUS3Q68CZ6 603 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 PDXDC1Q6P996 788 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 OTOP3Q7RTS5 596 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 ZNF280BQ86YH2 543 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 TDRD5Q8NAT2 981 aaKnown RBP7.84□□□□□ -1.15
VPS41-208ENST00000448833 FAM184AQ8NB25 1140 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 STAMQ92783 540 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 NXPE3Q969Y0 559 aa7.84□□□□□ -1.15
VPS41-208ENST00000448833 C8orf76Q96K31 380 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms