RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SHROOM3Q8TF72 1996 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 QARSP47897 775 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 SPATA2LQ8IUW3 424 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 VSTM4Q8IW00 320 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 RMDN1Q96DB5 314 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 HEMGNQ9BXL5 484 aa12.81□□□□□ -0.36
CCDC88A-207ENST00000436346 ARIH2O95376 493 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SYF2O95926 243 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 TADA2BQ86TJ2 420 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 LINC00301Q8NCQ3 95 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 CEP72Q9P209 647 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SEL1LQ9UBV2 794 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SLC9A2Q9UBY0 812 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 IQSEC2Q5JU85 1478 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 ITPRIPL1Q6GPH6 555 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 YIPF2Q9BWQ6 316 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 LY9Q9HBG7 655 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 CDV3Q9UKY7 258 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 OR6P1Q8NGX9 317 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SPATA31E1Q6ZUB1 1445 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 COPEO14579 308 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 MAP4P27816 1152 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 RAPGEF5Q92565 580 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 TRIM45Q9H8W5 580 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SELENONQ9NZV5 590 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 DNAJC12Q9UKB3 198 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SYTL3Q4VX76 610 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 KDELC2Q7Z4H8 507 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 PCDHB8Q9UN66 801 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 TMEM132DQ14C87 1099 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 FBXO41Q8TF61 875 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 DCUN1D1Q96GG9 259 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 PARK7Q99497 189 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 MUC3BQ9H195 1237 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 SYCE1LA8MT33 242 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 RASA4BC9J798 803 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 RASA4O43374 803 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 GRM4Q14833 912 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF564Q8TBZ8 553 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 RPS6KA4O75676 772 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 NNTQ13423 1086 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 C6orf118Q5T5N4 469 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF513Q8N8E2 541 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 EXOC4Q96A65 974 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 KLHL29Q96CT2 875 aa12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 EIF2AK1Q9BQI3 630 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-207ENST00000436346 PRAMEP78395 509 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 KYAT1Q16773 422 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TTC17Q96AE7 1141 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TSSK1BQ9BXA7 367 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 PCSK1NQ9UHG2 260 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 UPP2O95045 317 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 BTBD8Q5XKL5 378 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 HERC5Q9UII4 1024 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 DLC1Q96QB1 1528 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 A0A0G2JLW4 131 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ARHGAP10A1A4S6 786 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 NR1D1P20393 614 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 PTPN12Q05209 780 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TMEM62Q0P6H9 643 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 HSP90AA5PQ58FG0 334 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 APPL2Q8NEU8 664 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 DYDC2Q96IM9 177 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 PCDHB7Q9Y5E2 793 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 PODNQ7Z5L7 613 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 DDIASQ8IXT1 998 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TEKT4Q8WW24 435 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 CNOT8Q9UFF9 292 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 PLAAQ9Y263 795 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TRIM49BA6NDI0 452 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ALS2CLQ60I27 953 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF746Q6NUN9 644 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TADA2AO75478 443 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 KRT38O76015 456 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 KRT7P08729 469 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF157P51786 506 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TMEM260Q9NX78 707 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TRAPPC3O43617 180 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 MYO1DO94832 1006 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ALDH1A1P00352 501 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TDRD7Q8NHU6 1098 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 STRBPQ96SI9 672 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 SPON2Q9BUD6 331 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 CCNYL1Q8N7R7 359 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 TMEM35BQ8NCS4 154 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ZNF560Q96MR9 790 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 ING2Q9H160 280 aa12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 DHX35Q9H5Z1 703 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-207ENST00000436346 UBA6A0AVT1 1052 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 MAPK13O15264 365 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 PEX19P40855 299 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 PSMC5P62195 406 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 TAGAPQ8N103 731 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 KDM4CQ9H3R0 1056 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 DCP1AQ9NPI6 582 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 BARHL2Q9NY43 387 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SPATA31A3Q5VYP0 1347 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CTSHP09668 335 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 SETSIPP0DME0 302 aa12.78□□□□□ -0.36
CCDC88A-207ENST00000436346 CCNE1P24864 410 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms