RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 FKBP9O95302 570 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 MRPL49Q13405 166 aaKnown RBP6.66□□□□□ -1.34
PTPN4-204ENST00000431283 TERF2Q15554 542 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 DDB1Q16531 1140 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 METTL24Q5JXM2 366 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 FKBP9P1Q75LS8 142 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 CXorf67Q86X51 503 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-204ENST00000431283 CRAMP1Q96RY5 1269 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 CDC5LQ99459 802 aaKnown RBP6.66□□□□□ -1.34
PTPN4-204ENST00000431283 ANO3Q9BYT9 981 aa6.66□□□□□ -1.34
PTPN4-204ENST00000431283 NOC2LQ9Y3T9 749 aaKnown RBP6.66□□□□□ -1.34
PTPN4-204ENST00000431283 CC2D2AQ9P2K1 1620 aa6.65□□□□□ -1.34
PTPN4-204ENST00000431283 LAG3P18627 525 aa6.65□□□□□ -1.34
PTPN4-204ENST00000431283 NANOS3P60323 173 aaKnown RBP6.65□□□□□ -1.34
PTPN4-204ENST00000431283 VPS72Q15906 364 aa6.65□□□□□ -1.34
PTPN4-204ENST00000431283 RPUSD2Q8IZ73 545 aaKnown RBP6.65□□□□□ -1.34
PTPN4-204ENST00000431283 LEO1Q8WVC0 666 aaPredicted RBP6.65□□□□□ -1.34
PTPN4-204ENST00000431283 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.65□□□□□ -1.34
PTPN4-204ENST00000431283 MRPL42Q9Y6G3 142 aaKnown RBP6.65□□□□□ -1.34
PTPN4-204ENST00000431283 GCP02774 474 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 SEPT7Q16181 437 aaKnown RBP6.64□□□□□ -1.35
PTPN4-204ENST00000431283 PLEKHG4Q58EX7 1191 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 CCDC62Q6P9F0 684 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 LRRC55Q6ZSA7 311 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 DOK3Q7L591 496 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 OR52N2Q8NGI0 321 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 OR14C36Q8NHC7 312 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 AGAP2Q99490 1192 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 FDXACB1Q9BRP7 624 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-204ENST00000431283 ENKD1Q9H0I2 346 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 KCNH6Q9H252 994 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 SPON1Q9HCB6 807 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 PPP2R3BQ9Y5P8 575 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 SCRIBQ14160 1630 aa6.64□□□□□ -1.35
PTPN4-204ENST00000431283 LCHNA4D1U4 455 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 FAM83GA6ND36 823 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 LTA4HP09960 611 aaKnown RBP6.63□□□□□ -1.35
PTPN4-204ENST00000431283 ADCYAP1R1P41586 468 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 MEF2AQ02078 507 aaPredicted RBP6.63□□□□□ -1.35
PTPN4-204ENST00000431283 EIF4G1Q04637 1599 aaKnown RBP6.63□□□□□ -1.35
PTPN4-204ENST00000431283 ATP13A4Q4VNC1 1196 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 BROXQ5VW32 411 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 SLC5A5Q92911 643 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 USP7Q93009 1102 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 DCLRE1CQ96SD1 692 aaKnown RBP6.63□□□□□ -1.35
PTPN4-204ENST00000431283 NDC1Q9BTX1 674 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 SLC46A2Q9BY10 475 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 MS4A5Q9H3V2 200 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 CYP4F11Q9HBI6 524 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 TRPM5Q9NZQ8 1165 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 PRSS50Q9UI38 385 aa6.63□□□□□ -1.35
PTPN4-204ENST00000431283 A0A1W2PR48 441 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 GRXCR1A8MXD5 290 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 CLEC2LP0C7M8 214 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 MANFP55145 182 aaKnown RBP6.62□□□□□ -1.35
PTPN4-204ENST00000431283 APBA1Q02410 837 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 UBE3CQ15386 1083 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 DALRD3Q5D0E6 543 aaKnown RBP6.62□□□□□ -1.35
PTPN4-204ENST00000431283 PDZD4Q76G19 769 aaPredicted RBP6.62□□□□□ -1.35
PTPN4-204ENST00000431283 MSL3Q8N5Y2 521 aaKnown RBP6.62□□□□□ -1.35
PTPN4-204ENST00000431283 PAWRQ96IZ0 340 aaKnown RBP6.62□□□□□ -1.35
PTPN4-204ENST00000431283 MLST8Q9BVC4 326 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 EMC7Q9NPA0 242 aa6.62□□□□□ -1.35
PTPN4-204ENST00000431283 B3GALT2O43825 422 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 CFBP00751 764 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 KRT4P19013 534 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 BMP5P22003 454 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 MGAT1P26572 445 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 APOBEC3AP31941 199 aaPredicted RBP6.61□□□□□ -1.35
PTPN4-204ENST00000431283 KRTAP15-1Q3LI76 137 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 MBNL2Q5VZF2 373 aaKnown RBP6.61□□□□□ -1.35
PTPN4-204ENST00000431283 RHOUQ7L0Q8 258 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 RASSF3Q86WH2 238 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 XYLT1Q86Y38 959 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 VRK3Q8IV63 474 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 CPEB1Q9BZB8 566 aaKnown RBP6.61□□□□□ -1.35
PTPN4-204ENST00000431283 POGKQ9P215 609 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 EVLQ9UI08 416 aaPredicted RBP6.61□□□□□ -1.35
PTPN4-204ENST00000431283 PACSIN3Q9UKS6 424 aa6.61□□□□□ -1.35
PTPN4-204ENST00000431283 B5MCH6 92 aa6.6□□□□□ -1.35
PTPN4-204ENST00000431283 RNASET2O00584 256 aaKnown RBP6.6□□□□□ -1.35
PTPN4-204ENST00000431283 PDE8AO60658 829 aa6.6□□□□□ -1.35
PTPN4-204ENST00000431283 MYCLP1P12525 358 aaPredicted RBP6.6□□□□□ -1.35
PTPN4-204ENST00000431283 EFCAB12Q6NXP0 572 aa6.6□□□□□ -1.35
PTPN4-204ENST00000431283 Q6ZPA2 131 aa6.6□□□□□ -1.35
PTPN4-204ENST00000431283 GDF7Q7Z4P5 450 aa6.6□□□□□ -1.35
PTPN4-204ENST00000431283 LSM14BQ9BX40 385 aaKnown RBP6.6□□□□□ -1.35
PTPN4-204ENST00000431283 SPATA31D3P0C874 917 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 NR4A1P22736 598 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 USP14P54578 494 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 MXRA7P84157 204 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 SPATA31D4Q6ZUB0 917 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 KIAA0907Q7Z7F0 614 aaPredicted RBP6.59□□□□□ -1.35
PTPN4-204ENST00000431283 KRTAP17-1Q9BYP8 105 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 KCTD10Q9H3F6 313 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 MAPRE3Q9UPY8 281 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 CDY2AQ9Y6F7 541 aa6.59□□□□□ -1.35
PTPN4-204ENST00000431283 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.58□□□□□ -1.36
PTPN4-204ENST00000431283 GAGE12BA1L429 117 aa6.58□□□□□ -1.36
PTPN4-204ENST00000431283 GAGE12HA6NDE8 117 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms