RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 CHST7Q9NS84 486 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 PITPNM2Q9BZ72 1349 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ANKRD62A6NC57 917 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 PAX7P23759 505 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ELF1P32519 619 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 STX2P32856 288 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ERMARDQ5T6L9 678 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ZNF449Q6P9G9 518 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 RNF207Q6ZRF8 634 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ANAPC7Q9UJX3 599 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 CNTNAP4Q9C0A0 1308 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 LRP5O75197 1615 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 PAPPAQ13219 1627 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 O00370 1275 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 SMARCA1P28370 1054 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 JAM2P57087 298 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 GPC5P78333 572 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 PLCB3Q01970 1234 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 KRT17Q04695 432 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 DDR1Q08345 913 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 AGBL2Q5U5Z8 902 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 PADI6Q6TGC4 694 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 NOP9Q86U38 636 aaKnown RBP13.4□□□□□ -0.26
CDH3-202ENST00000429102 SIAH1Q8IUQ4 282 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 CDAN1Q8IWY9 1227 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 MICAL1Q8TDZ2 1067 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 NAP1L3Q99457 506 aaPredicted RBP13.4□□□□□ -0.26
CDH3-202ENST00000429102 UNC45AQ9H3U1 944 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 ECT2Q9H8V3 914 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 MTUS1Q9ULD2 1270 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 RPTORQ8N122 1335 aa13.4□□□□□ -0.26
CDH3-202ENST00000429102 DIAPH2O60879 1101 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 IFNB1P01574 187 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 BRAFP15056 766 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 PRKCIP41743 596 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 VAMP7P51809 220 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 ELF3P78545 371 aaPredicted RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 TMED2Q15363 201 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 TRPM8Q7Z2W7 1104 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 CCT6BQ92526 530 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 TAOK3Q9H2K8 898 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 CDC42EP4Q9H3Q1 356 aaKnown RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 IGF2BP3O00425 579 aaKnown RBP eCLIP13.39□□□□□ -0.27
CDH3-202ENST00000429102 BBOX1O75936 387 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 CYP3A4P08684 503 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 MARSP56192 900 aaKnown RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 ORC2Q13416 577 aaPredicted RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 RRP1BQ14684 758 aaKnown RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 SH3BP5LQ7L8J4 393 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 OTOP1Q7RTM1 612 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 NSMCE1Q8WV22 266 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 SPOCK2Q92563 424 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 BICD1Q96G01 975 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 ACTR5Q9H9F9 607 aaPredicted RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 PI4KBQ9UBF8 816 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 MXI1P50539 228 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 MEX3CQ5U5Q3 659 aaKnown RBP13.39□□□□□ -0.27
CDH3-202ENST00000429102 EXOC3L1Q86VI1 746 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 FBXO41Q8TF61 875 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 SLC5A5Q92911 643 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 EPB41L4BQ9H329 900 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 C10orf88Q9H8K7 445 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 USP21Q9UK80 565 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 VAV3Q9UKW4 847 aa13.39□□□□□ -0.27
CDH3-202ENST00000429102 ECEL1O95672 775 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 EIF2AK2P19525 551 aaKnown RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 SESN3P58005 492 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 SWT1Q5T5J6 900 aaKnown RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 C1orf186Q6ZWK4 172 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 EPM2AIP1Q7L775 607 aaPredicted RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 MIER3Q7Z3K6 550 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 SUPT20HQ8NEM7 779 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 GLIS2Q9BZE0 524 aaPredicted RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 WDR11Q9BZH6 1224 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 CARD9Q9H257 536 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 ZDHHC18Q9NUE0 388 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 GEMIN8Q9NWZ8 242 aaKnown RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 GAKO14976 1311 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 IPO5O00410 1097 aaKnown RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 RIPK2O43353 540 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 PHF2O75151 1096 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 PPFIA2O75334 1257 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 POLR2MP0CAP2 368 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 CD58P19256 250 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 PPATQ06203 517 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 C4orf33Q8N1A6 199 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 AGBL1Q96MI9 1066 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 ZSWIM1Q9BR11 485 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 GRHL1Q9NZI5 618 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 MYH1P12882 1939 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 MYH4Q9Y623 1939 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 IGKV6D-41A0A0C4DH26 115 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 ATP6V1G2O95670 118 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 ATF7P17544 494 aaPredicted RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 VCAM1P19320 739 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 AUHQ13825 339 aaKnown RBP13.38□□□□□ -0.27
CDH3-202ENST00000429102 ZNF394Q53GI3 561 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 HYIQ5T013 277 aa13.38□□□□□ -0.27
CDH3-202ENST00000429102 SLFN11Q7Z7L1 901 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms