RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 RSPH10B2B2RC85 870 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 B3GAT3O94766 335 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 GAS8O95995 478 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 RSPH10BP0C881 870 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 CIITAP33076 1130 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 PDE6CP51160 858 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ATP2C1P98194 919 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 CACNB2Q08289 660 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 RPS6KA1Q15418 735 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 LMBRD2Q68DH5 695 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 U2AF1L4Q8WU68 220 aaKnown RBP11.43□□□□□ -0.58
TCOF1-204ENST00000427724 BRI3BPQ8WY22 251 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 ZNF653Q96CK0 615 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 TRPC7Q9HCX4 862 aa11.43□□□□□ -0.58
TCOF1-204ENST00000427724 SLIT3O75094 1523 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 RNF8O76064 485 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 SYN1P17600 705 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 SSTR3P32745 418 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 GPC3P51654 580 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 EHHADHQ08426 723 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 OR6B2Q6IFH4 312 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 DNERQ8NFT8 737 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 SELENOSQ9BQE4 189 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 MIS12Q9H081 205 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 MAD2L2Q9UI95 211 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 IKBKGQ9Y6K9 419 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 GYPCP04921 128 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 CD44P16070 742 aaKnown RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 GUCY2DQ02846 1103 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 SHROOM1Q2M3G4 852 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 METTL7BQ6UX53 244 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 XXYLT1Q8NBI6 393 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 PURBQ96QR8 312 aaKnown RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 CREBZFQ9NS37 354 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 TFR2Q9UP52 801 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 PCDHB12Q9Y5F1 795 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 RIC1Q4ADV7 1423 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 TBKBP1A7MCY6 615 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 STXBP3O00186 592 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 KCNK3O14649 394 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 STAM2O75886 525 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 DPYDQ12882 1025 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 NME8Q8N427 588 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 TBC1D31Q96DN5 1066 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 RIT2Q99578 217 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 TACO1Q9BSH4 297 aaKnown RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 THAP9Q9H5L6 903 aa11.42□□□□□ -0.58
TCOF1-204ENST00000427724 AGO2Q9UKV8 859 aaKnown RBP11.42□□□□□ -0.58
TCOF1-204ENST00000427724 A8MXQ7 604 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 NSFP46459 744 aaKnown RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 IKBKEQ14164 716 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 MFSD10Q14728 455 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 TMEM132BQ14DG7 1078 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ZNF699Q32M78 642 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 GLRA4Q5JXX5 417 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 PHF20Q9BVI0 1012 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 UBE2OQ9C0C9 1292 aaKnown RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 SLC8A2Q9UPR5 921 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 NFAT5O94916 1531 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 NALCNQ8IZF0 1738 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 A0A1W2PRG0 241 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ASAP2O43150 1006 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ATP1A1P05023 1023 aaKnown RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ACOT2P49753 483 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 PSEN2P49810 448 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 RNF219Q5W0B1 726 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 TRIM65Q6PJ69 517 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 PEX26Q7Z412 305 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.41□□□□□ -0.583e-8■□□□□ 10.1
TCOF1-204ENST00000427724 TRAPPC12Q8WVT3 735 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 CPSF2Q9P2I0 782 aaKnown RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 MYZAPP0CAP1 466 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 HIRAP54198 1017 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 MFAP3P55082 362 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ALCAMQ13740 583 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 ANKS4BQ8N8V4 417 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 FAM161BQ96MY7 647 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 SEPT5Q99719 369 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-204ENST00000427724 SNX9Q9Y5X1 595 aa11.41□□□□□ -0.58
TCOF1-204ENST00000427724 TBC1D12O60347 775 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 NPTXRO95502 500 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 FTCDO95954 541 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 GCLMP48507 274 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 KIF11P52732 1056 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 KRT81Q14533 505 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 MGAT5BQ3V5L5 792 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 OTOP2Q7RTS6 562 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 ADAT2Q7Z6V5 191 aaKnown RBP11.4□□□□□ -0.58
TCOF1-204ENST00000427724 NOA1Q8NC60 698 aaKnown RBP11.4□□□□□ -0.58
TCOF1-204ENST00000427724 RIN2Q8WYP3 895 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-204ENST00000427724 HPS3Q969F9 1004 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 TSNARE1Q96NA8 513 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 SENP7Q9BQF6 1050 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 NDST4Q9H3R1 872 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 SLC38A10Q9HBR0 1119 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 RBAKQ9NYW8 714 aaPredicted RBP11.4□□□□□ -0.58
TCOF1-204ENST00000427724 TGFB3P10600 412 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 NOTUMQ6P988 496 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 PHLDB2Q86SQ0 1253 aa11.4□□□□□ -0.58
TCOF1-204ENST00000427724 GSDMBQ8TAX9 411 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms