RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 ALDH6A1Q02252 535 aaKnown RBP4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 ROM1Q03395 351 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZNF174Q15697 407 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 C21orf62-AS1Q17RA5 79 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 NRN1LQ496H8 165 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 TRIM68Q6AZZ1 485 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 OTOP1Q7RTM1 612 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 POLNQ7Z5Q5 900 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 TMEM176AQ96HP8 235 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 SRRDQ9UH36 339 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 TTC21AQ8NDW8 1320 aa4.9□□□□□ -1.63
HMGB3P20-201ENST00000417997 OVOS2A0A0J9YW53 1432 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 DCCP43146 1447 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 OVOS2Q6IE36 1432 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 SMG6Q86US8 1419 aaKnown RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 PEAK1Q9H792 1746 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 IQSEC2Q5JU85 1478 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MATN2O00339 956 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 FYB1O15117 783 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 AKAP8O43823 692 aaKnown RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 SDSP20132 328 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MSX2P35548 267 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 RPS19P39019 145 aaKnown RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 RGS3P49796 1198 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MTHFSP49914 203 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MECP2P51608 486 aaKnown RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 ADAM15Q13444 863 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 NFYCQ13952 458 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 CFAP100Q494V2 611 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 PRAMEF9Q5VWM5 478 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLFN12LQ6IEE8 588 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 RTN4RL1Q86UN2 441 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 NME9Q86XW9 330 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 KIAA1958Q8N8K9 716 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLC16A11Q8NCK7 471 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 UBXN4Q92575 508 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 FOXRED1Q96CU9 486 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 FOXB1Q99853 325 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZNF747Q9BV97 191 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 ACSS2Q9NR19 701 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 SAE1Q9UBE0 346 aaPredicted RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 NUDCQ9Y266 331 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 TESMINQ9Y4I5 508 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 TTC21BQ7Z4L5 1316 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MAPK8IP3Q9UPT6 1336 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 PHRF1Q9P1Y6 1649 aaKnown RBP4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 DLG5Q8TDM6 1919 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 ALS2Q96Q42 1657 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 MSH6P52701 1360 aa4.89□□□□□ -1.63
HMGB3P20-201ENST00000417997 UBA6A0AVT1 1052 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 TRAF5O00463 557 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 DVL2O14641 736 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 PPM1GO15355 546 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 APOL3O95236 402 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLC9A1P19634 815 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 GDF5P43026 501 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 FNTBP49356 437 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 HHEXQ03014 270 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 PABPC4Q13310 644 aaKnown RBP eCLIP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 USP39Q53GS9 565 aaKnown RBP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 TTC38Q5R3I4 469 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 CDCA2Q69YH5 1023 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 CCDC146Q8IYE0 955 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 SHCBP1Q8NEM2 672 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 CFHR4Q92496 578 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 GCDHQ92947 438 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 FAM89AQ96GI7 184 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 TUBGCP5Q96RT8 1024 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 CSRNP2Q9H175 543 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 RGPD1P0DJD0 1748 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 TMEM94Q12767 1356 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 AATKQ6ZMQ8 1374 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 NCOA3Q9Y6Q9 1424 aa4.88□□□□□ -1.63
HMGB3P20-201ENST00000417997 FAM208AQ9UK61 1670 aaKnown RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 A0A1W2PRX2 142 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 GOLGA8BA8MQT2 603 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 CBX4O00257 560 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLC26A4O43511 780 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 KPNA6O60684 536 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 PRLP01236 227 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 CYP17A1P05093 508 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 U2AF1L5P0DN76 240 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 ATF3P18847 181 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 PTX3P26022 381 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 STAT3P40763 770 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 NEK4P51957 841 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 ATP2C1P98194 919 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 U2AF1Q01081 240 aaKnown RBP eCLIP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 GRM7Q14831 915 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 ACAP1Q15027 740 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 KLHDC10Q6PID8 442 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 CRIP3Q6Q6R5 217 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 RNF207Q6ZRF8 634 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 USP51Q70EK9 711 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 SGMS1Q86VZ5 419 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 D2HGDHQ8N465 521 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZNF808Q8N4W9 903 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 OR5AN1Q8NGI8 311 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 MAML3Q96JK9 1138 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 SCAND2PQ9GZW5 306 aaPredicted RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms