RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 DCAF4L1Q3SXM0 396 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 LCE2DQ5TA82 110 aaPredicted RBP9.27□□□□□ -0.93
TRIM48-201ENST00000417545 NT5DC1Q5TFE4 455 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 SLFN12LQ6IEE8 588 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 CNKSR3Q6P9H4 555 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 SLC27A1Q6PCB7 646 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 PSRC1Q6PGN9 363 aaPredicted RBP9.27□□□□□ -0.93
TRIM48-201ENST00000417545 ZBTB33Q86T24 672 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 MAP4K3Q8IVH8 894 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 GUF1Q8N442 669 aaKnown RBP9.27□□□□□ -0.93
TRIM48-201ENST00000417545 RNF169Q8NCN4 708 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 KIAA0895Q8NCT3 520 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 SPATA20Q8TB22 786 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 TMEM40Q8WWA1 233 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 POMGNT1Q8WZA1 660 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 BADQ92934 168 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 CCDC51Q96ER9 411 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 TARS2Q9BW92 718 aaKnown RBP9.27□□□□□ -0.93
TRIM48-201ENST00000417545 FGFBP2Q9BYJ0 223 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 MINDY3Q9H8M7 445 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 CHST12Q9NRB3 414 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 AGPAT5Q9NUQ2 364 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 TYW1Q9NV66 732 aaKnown RBP9.27□□□□□ -0.93
TRIM48-201ENST00000417545 LRFN2Q9ULH4 789 aa9.27□□□□□ -0.93
TRIM48-201ENST00000417545 NBNO60934 754 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 TOM1L1O75674 476 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 NPTXRO95502 500 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 FGFR1OPO95684 399 aaKnown RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 ARF4P18085 180 aaPredicted RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 RPL13P26373 211 aaKnown RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 PRCPP42785 496 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 RAB27AP51159 221 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 YARSP54577 528 aaKnown RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 TPM4P67936 248 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 NOLC1Q14978 699 aaKnown RBP eCLIP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 FAM187BQ17R55 369 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 MPZL3Q6UWV2 235 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 ZPBP2Q6X784 338 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 CDR2LQ86X02 465 aaPredicted RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 GLIS3Q8NEA6 775 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 DBF4BQ8NFT6 615 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 ZNF507Q8TCN5 953 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 SCFD1Q8WVM8 642 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 NELFBQ8WX92 580 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 DHTKD1Q96HY7 919 aaPredicted RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 ADAM2Q99965 735 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 MSTO1Q9BUK6 570 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 APOL6Q9BWW8 343 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 CCDC113Q9H0I3 377 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 FZD8Q9H461 694 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 AGO3Q9H9G7 860 aaKnown RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 ERVK-5Q9HDB9 667 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 IL23AQ9NPF7 189 aa9.26□□□□□ -0.93
TRIM48-201ENST00000417545 CGNQ9P2M7 1197 aaKnown RBP9.26□□□□□ -0.93
TRIM48-201ENST00000417545 BECN2A8MW95 431 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 CLIC2O15247 247 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 EFCAB14O75071 495 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 LDHAP00338 332 aaKnown RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 FGBP02675 491 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 AMHP03971 560 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 ACRP10323 421 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 CCNE1P24864 410 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 CYP2J2P51589 502 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 STX17P56962 302 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 SNRPFP62306 86 aaKnown RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 EHHADHQ08426 723 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 MBTPS1Q14703 1052 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 BMT2Q1RMZ1 405 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 DPCR1Q3MIW9 517 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 PLEKHG4Q58EX7 1191 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 RBM43Q6ZSC3 357 aaKnown RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 FAM43BQ6ZT52 329 aaPredicted RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 EPM2AIP1Q7L775 607 aaPredicted RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 CREBRFQ8IUR6 639 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 ADSSL1Q8N142 457 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 P2RX5Q93086 422 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 PGBD4Q96DM1 585 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 FIZ1Q96SL8 496 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 ACO2Q99798 780 aaKnown RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 CCDC94Q9BW85 323 aaPredicted RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 TSPY26PQ9H489 355 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 PCIF1Q9H4Z3 704 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 PDZD7Q9H5P4 517 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 C1orf112Q9NSG2 853 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 AGO2Q9UKV8 859 aaKnown RBP9.25□□□□□ -0.93
TRIM48-201ENST00000417545 TNFSF13BQ9Y275 285 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 USP20Q9Y2K6 914 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 FRMD4BQ9Y2L6 1034 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 BRCA2P51587 3418 aa9.25□□□□□ -0.93
TRIM48-201ENST00000417545 MICAL3Q7RTP6 2002 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 PDXKO00764 312 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 KIAA0391O15091 583 aaKnown RBP9.24□□□□□ -0.93
TRIM48-201ENST00000417545 CETN3O15182 167 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 EXOC3O60645 756 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 PPP1R37O75864 691 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 CLSTN1O94985 981 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 PIGRP01833 764 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 CXCL10P02778 98 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 STAG3L1P0CL83 205 aa9.24□□□□□ -0.93
TRIM48-201ENST00000417545 MCF2P10911 925 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms