RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 FATE1Q969F0 183 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 COA7Q96BR5 231 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 KIAA1683Q9H0B3 1180 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 XYLT2Q9H1B5 865 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 C12orf65Q9H3J6 166 aaKnown RBP5.93□□□□□ -1.46
VPS54-204ENST00000416400 DDX20Q9UHI6 824 aaKnown RBP5.93□□□□□ -1.46
VPS54-204ENST00000416400 EVLQ9UI08 416 aaPredicted RBP5.93□□□□□ -1.46
VPS54-204ENST00000416400 DNAI1Q9UI46 699 aa5.93□□□□□ -1.46
VPS54-204ENST00000416400 LAMTOR5O43504 91 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 B4GALT3O60512 393 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 TRIM27P14373 513 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 PDCP20941 246 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 ANTXR2P58335 489 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 RAC3P60763 192 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 ADAM15Q13444 863 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 BIRC2Q13490 618 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 BRD3Q15059 726 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 ADRM1Q16186 407 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 SPOCD1Q6ZMY3 1216 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 USP45Q70EL2 814 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 LARP4Q71RC2 724 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS54-204ENST00000416400 GLB1L2Q8IW92 636 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 GRAMD1CQ8IYS0 662 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 DIS3LQ8TF46 1054 aaKnown RBP5.92□□□□□ -1.46
VPS54-204ENST00000416400 TTC17Q96AE7 1141 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 TEPSINQ96N21 525 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 UIMC1Q96RL1 719 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 RPS6KC1Q96S38 1066 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 SARGQ9BW04 601 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 PUF60Q9UHX1 559 aaKnown RBP5.92□□□□□ -1.46
VPS54-204ENST00000416400 PTPN22Q9Y2R2 807 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 SLC4A7Q9Y6M7 1214 aa5.92□□□□□ -1.46
VPS54-204ENST00000416400 NPEPPSL1A6NEC2 478 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 ARHGAP6O43182 974 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 NBPF7P0C2Y1 421 aaPredicted RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 HOXA5P20719 270 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 OS9Q13438 667 aaPredicted RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 MUM1L1Q5H9M0 696 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 ZFYVE27Q5T4F4 411 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 KRT40Q6A162 431 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 GLB1LQ6UWU2 654 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 BTNL9Q6UXG8 535 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 GAREM2Q75VX8 874 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 CAMKK1Q8N5S9 505 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 MVB12AQ96EY5 273 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 PAWRQ96IZ0 340 aaKnown RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 FAM193BQ96PV7 902 aaPredicted RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 LMF1Q96S06 567 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 ACO2Q99798 780 aaKnown RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 ADI1Q9BV57 179 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 OSBPL6Q9BZF3 934 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 ZNF700Q9H0M5 742 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 ADAM7Q9H2U9 754 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 MAN1C1Q9NR34 630 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 DNM3Q9UQ16 869 aa5.91□□□□□ -1.46
VPS54-204ENST00000416400 RBM8AQ9Y5S9 174 aaKnown RBP5.91□□□□□ -1.46
VPS54-204ENST00000416400 PLEKHD1A6NEE1 506 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 SEC24DO94855 1032 aaPredicted RBP5.9□□□□□ -1.46
VPS54-204ENST00000416400 NFIXQ14938 502 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 ZNF827Q17R98 1081 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 PGS1Q32NB8 556 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 FBLN7Q53RD9 439 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 FAM180AQ6UWF9 173 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 SAMD3Q8N6K7 520 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 GLB1L3Q8NCI6 653 aaPredicted RBP5.9□□□□□ -1.46
VPS54-204ENST00000416400 ZBTB34Q8NCN2 500 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 GIMAP8Q8ND71 665 aaPredicted RBP5.9□□□□□ -1.46
VPS54-204ENST00000416400 PJA1Q8NG27 643 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 OR14K1Q8NGZ2 314 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 MORC4Q8TE76 937 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 FBXO41Q8TF61 875 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 NRG4Q8WWG1 115 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 SLC7A6OSQ96CW6 309 aaPredicted RBP5.9□□□□□ -1.46
VPS54-204ENST00000416400 LRRC37BQ96QE4 947 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 MPHOSPH6Q99547 160 aaKnown RBP5.9□□□□□ -1.46
VPS54-204ENST00000416400 HAPLN2Q9GZV7 340 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 GREM2Q9H772 168 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 FAM204AQ9H8W3 233 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 SEC61A2Q9H9S3 476 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.9□□□□□ -1.46
VPS54-204ENST00000416400 RIPOR2Q9Y4F9 1068 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 DUSP10Q9Y6W6 482 aa5.9□□□□□ -1.46
VPS54-204ENST00000416400 CCDC154A6NI56 674 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 HTRA2O43464 458 aaPredicted RBP5.89□□□□□ -1.47
VPS54-204ENST00000416400 PLATP00750 562 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 MYBP10242 640 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 MCAMP43121 646 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 FXR1P51114 621 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS54-204ENST00000416400 CTSWP56202 376 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 MGAT5Q09328 741 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 PICALMQ13492 652 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 SAFBQ15424 915 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS54-204ENST00000416400 COBLL1Q53SF7 1204 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 SLFN13Q68D06 897 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 TTLL10Q6ZVT0 673 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 MIGA2Q7L4E1 593 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 DENND1CQ8IV53 801 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 BCL6BQ8N143 479 aaPredicted RBP5.89□□□□□ -1.47
VPS54-204ENST00000416400 PRR18Q8N4B5 295 aa5.89□□□□□ -1.47
VPS54-204ENST00000416400 PLA2G15Q8NCC3 412 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms