RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RSPH10B2B2RC85 870 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 PDE2AO00408 941 aaPredicted RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 NFIBO00712 420 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 AKAP3O75969 853 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 CLTBP09497 229 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 RSPH10BP0C881 870 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 UCHL3P15374 230 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 CST5P28325 142 aaPredicted RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 PSMC2P35998 433 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 GJA9P57773 515 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 CTTNQ14247 550 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 IFI16Q16666 785 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 C9orf50Q5SZB4 431 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 EEPD1Q7L9B9 569 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 VPS36Q86VN1 386 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 DEFB123Q8N688 67 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 MYCT1Q8N699 235 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 SPAG5Q96R06 1193 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 UPF3AQ9H1J1 476 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 MED4Q9NPJ6 270 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 PSD3Q9NYI0 1048 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 PCDHGC5Q9Y5F6 944 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 GRID2IPA4D2P6 1211 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 CES2O00748 559 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 ASGR1P07306 291 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 MAPTP10636 758 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 PON1P27169 355 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 BAATQ14032 418 aaPredicted RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 PPP2R5AQ15172 486 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 SHHQ15465 462 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 GLE1Q53GS7 698 aaKnown RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 GNASQ5JWF2 1037 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 CCDC181Q5TID7 509 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 GPR153Q6NV75 609 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 HS2ST1Q7LGA3 356 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 FBXO16Q8IX29 292 aaPredicted RBP16.1■□□□□ 0.17
USP4-203ENST00000415188 FAM71BQ8TC56 605 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 TBC1D5Q92609 795 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 SLC35C1Q96A29 364 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 BORCS6Q96GS4 357 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 UNC45AQ9H3U1 944 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 PDGFCQ9NRA1 345 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 PCDHB13Q9Y5F0 798 aa16.1■□□□□ 0.17
USP4-203ENST00000415188 ZMYM2Q9UBW7 1377 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 LCTP09848 1927 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 LRRC37A2A6NM11 1700 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TGFB1I1O43294 461 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 FERP16591 822 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TNFRSF8P28908 595 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 BEX3Q00994 111 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TNFAIP2Q03169 654 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 FAAP100Q0VG06 881 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TMEM63BQ5T3F8 832 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 IRF2BP2Q7Z5L9 587 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 SLC9A9Q8IVB4 645 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 FAM186BQ8IYM0 893 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TMEM174Q8WUU8 243 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 EXOC4Q96A65 974 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 TLR10Q9BXR5 811 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 SPC25Q9HBM1 224 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 INTUQ9ULD6 942 aa16.09■□□□□ 0.17
USP4-203ENST00000415188 LAMA2P24043 3122 aaKnown RBP16.09■□□□□ 0.17
USP4-203ENST00000415188 ARHGEF35A5YM69 484 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 IPO5O00410 1097 aaKnown RBP16.08■□□□□ 0.16
USP4-203ENST00000415188 KIAA0355O15063 1070 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 ZNF185O15231 689 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 CLSTN1O94985 981 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 SMPD1P17405 629 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 AARSP49588 968 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP4-203ENST00000415188 JAM2P57087 298 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 CFAP221Q4G0U5 840 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 HSP90B2PQ58FF3 399 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 DCAF17Q5H9S7 520 aaPredicted RBP16.08■□□□□ 0.16
USP4-203ENST00000415188 SLC30A10Q6XR72 485 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 ZNF720Q7Z2F6 126 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 ANKRD33Q7Z3H0 272 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 FAM178BQ8IXR5 827 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 PCSK9Q8NBP7 692 aaKnown RBP16.08■□□□□ 0.16
USP4-203ENST00000415188 SPATA4Q8NEY3 305 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 PIGOQ8TEQ8 1089 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 CLEC4DQ8WXI8 215 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 VTI1AQ96AJ9 217 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 GLT1D1Q96MS3 346 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 TIPINQ9BVW5 301 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 PDE11AQ9HCR9 933 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 TMEM39AQ9NV64 488 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 DMAC2Q9NW81 257 aa16.08■□□□□ 0.16
USP4-203ENST00000415188 DBR1Q9UK59 544 aaKnown RBP16.08■□□□□ 0.16
USP4-203ENST00000415188 GNEQ9Y223 722 aaKnown RBP16.08■□□□□ 0.16
USP4-203ENST00000415188 A0A087X0T9 212 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 CCDC66A2RUB6 948 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 H3BQF6 201 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 POLR3GO15318 223 aaPredicted RBP16.07■□□□□ 0.16
USP4-203ENST00000415188 CHMP2AO43633 222 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 LYPLA2O95372 231 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 FAM228BP0C875 321 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 ARP10275 920 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 SLC9A1P19634 815 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 RFX1P22670 979 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 EPHB4P54760 987 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms