RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 TMOD4Q9NZQ9 345 aa10.55□□□□□ -0.72
CD44-206ENST00000415148 SERPINA10Q9UK55 444 aa10.55□□□□□ -0.72
CD44-206ENST00000415148 SNX24Q9Y343 169 aa10.55□□□□□ -0.72
CD44-206ENST00000415148 NRXN2Q9P2S2 1712 aa10.55□□□□□ -0.72
CD44-206ENST00000415148 FAM196BA6NMK8 535 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 PPIP5K2O43314 1243 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 CTNND1O60716 968 aaKnown RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 FTLP02792 175 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 VIL1P09327 827 aaKnown RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 ALAS1P13196 640 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ELF1P32519 619 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 MARCKSL1P49006 195 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 PEX5P50542 639 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 STAT2P52630 851 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ARHGAP44Q17R89 818 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 CYFIP1Q7L576 1253 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 LRRC34Q8IZ02 419 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 SYCP3Q8IZU3 236 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 SELENOSQ9BQE4 189 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ZSWIM1Q9BR11 485 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 AZI2Q9H6S1 392 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 AGAP1Q9UPQ3 857 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 RBBP6Q7Z6E9 1792 aaKnown RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 ANKRD31Q8N7Z5 1873 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ONECUT3O60422 494 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 DNAJC8O75937 253 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 TRIM49P0CI25 452 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 TRIM49CP0CI26 452 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 SLCO1A2P46721 670 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 PLTPP55058 493 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ELF3P78545 371 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 ITIH4Q14624 930 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 CCDC38Q502W7 563 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 CEP55Q53EZ4 464 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 SEL1L2Q5TEA6 688 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ANKS4BQ8N8V4 417 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 FBXO25Q8TCJ0 367 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 TBC1D31Q96DN5 1066 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 RIT2Q99578 217 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 ROPN1BQ9BZX4 212 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 ROPN1Q9HAT0 212 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 GOPCQ9HD26 462 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 UBE2TQ9NPD8 197 aaPredicted RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 SEPT11Q9NVA2 429 aaKnown RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 GRHL1Q9NZI5 618 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 CTTNBP2NLQ9P2B4 639 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 MTUS1Q9ULD2 1270 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 MRPL11Q9Y3B7 192 aaKnown RBP10.54□□□□□ -0.72
CD44-206ENST00000415148 PCDHA3Q9Y5H8 950 aa10.54□□□□□ -0.72
CD44-206ENST00000415148 RPTORQ8N122 1335 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 ARHGEF35A5YM69 484 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 ANKRD63C9JTQ0 380 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 RGS16O15492 202 aaPredicted RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 PLA2G6O60733 806 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 RPSAP08865 295 aaKnown RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 RARGP13631 454 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 RDXP35241 583 aaKnown RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 PDE6BP35913 854 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 VAMP7P51809 220 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 XRCC4Q13426 336 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 NEDD9Q14511 834 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 EPC2Q52LR7 807 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 TNFAIP8L3Q5GJ75 292 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 PIGWQ7Z7B1 504 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 PRELID2Q8N945 189 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 CCDC197Q8NCU1 140 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 EPS8L3Q8TE67 593 aaKnown RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 C18orf8Q96DM3 657 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 HOOK2Q96ED9 719 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 ZNF577Q9BSK1 485 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 TEKT3Q9BXF9 490 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 SEMA4AQ9H3S1 761 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 LARSQ9P2J5 1176 aaKnown RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 TRPC6Q9Y210 931 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 SMCHD1A6NHR9 2005 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 ZNF536O15090 1300 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 TCRBV7S2A1N4TA0A589 114 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 CCT8L1PA6NM43 557 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 ZBTB39O15060 712 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 C21orf2O43822 256 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 MGRN1O60291 552 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 GDF11O95390 407 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 CFBP00751 764 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 GH2P01242 217 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 GSTA1P08263 222 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 MMEP08473 750 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 CREB1P16220 341 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 IFNAR2P48551 515 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 RBM5P52756 815 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD44-206ENST00000415148 CACNB3P54284 484 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 SLC29A2Q14542 456 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 LLGL1Q15334 1064 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 FAM133BQ5BKY9 247 aaKnown RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 DACT2Q5SW24 774 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 HIBCHQ6NVY1 386 aaPredicted RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 TLDC1Q6P9B6 456 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 C12orf50Q8NA57 414 aaPredicted RBP10.53□□□□□ -0.72
CD44-206ENST00000415148 GIMAP7Q8NHV1 300 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 FBXO41Q8TF61 875 aa10.53□□□□□ -0.72
CD44-206ENST00000415148 CHURC1Q8WUH1 139 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms