RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TNPO2O14787 897 aaKnown RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 CLCN3P51790 818 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 DR1Q01658 176 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 CLUL1Q15846 466 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 OTOP1Q7RTM1 612 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 SH3RF1Q7Z6J0 888 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 RHOT2Q8IXI1 618 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 MAIP1Q8WWC4 291 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 FAM193BQ96PV7 902 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 MTMR9Q96QG7 549 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 ERGIC2Q96RQ1 377 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 PACSIN1Q9BY11 444 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 WEE2P0C1S8 567 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 RWDD2BP57060 319 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 RNASELQ05823 741 aaKnown RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 MYO1EQ12965 1108 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 PPP2R5CQ13362 524 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 KLHDC7AQ5VTJ3 777 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 CCNYQ8ND76 341 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 IL31RAQ8NI17 732 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 FAM118BQ9BPY3 351 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 TOPORSQ9NS56 1045 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 LMO7Q8WWI1 1683 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ACSL3O95573 720 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 FGRP09769 529 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 C6orf222P0C671 652 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ZSCAN20P17040 1043 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 MXRA7P84157 204 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 GABPAQ06546 454 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 C6orf163Q5TEZ5 329 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 EMBQ6PCB8 327 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 TRPM4Q8TD43 1214 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 P2RX7Q99572 595 aaKnown RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 AGPAT1Q99943 283 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 MIS12Q9H081 205 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 PXMP2Q9NR77 195 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 PLAGL2Q9UPG8 496 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 PI4K2BG5E9Z4 385 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 FOXN3O00409 490 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ECEL1O95672 775 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 PSMA2P25787 234 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 EPHX2P34913 555 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 NPTX2P47972 431 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 BASP1P80723 227 aaKnown RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 TBX2Q13207 712 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 DUOXA2Q1HG44 320 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 RSRC2Q7L4I2 434 aaKnown RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 COG1Q8WTW3 980 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 KIAA1683Q9H0B3 1180 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ATRNO75882 1429 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ZRANB2O95218 330 aaKnown RBP eCLIP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 CYP2C8P10632 490 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 COPB2P35606 906 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 ARHGAP25P42331 645 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 LY6KQ17RY6 165 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 KCTD6Q8NC69 237 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 TMEM35BQ8NCS4 154 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 OR6J1Q8NGC5 347 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 RIN2Q8WYP3 895 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-204ENST00000412568 KIAA1586Q9HCI6 787 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 CAPN6Q9Y6Q1 641 aa11.97□□□□□ -0.49
PTPRF-204ENST00000412568 FAM208AQ9UK61 1670 aaKnown RBP11.96□□□□□ -0.49
PTPRF-204ENST00000412568 F5H423 210 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-204ENST00000412568 MTM1Q13496 603 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 PGM5Q15124 567 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 SMAD1Q15797 465 aaKnown RBP11.96□□□□□ -0.49
PTPRF-204ENST00000412568 ECM1Q16610 540 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 EFCAB12Q6NXP0 572 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 RSPH3Q86UC2 560 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 ABI1Q8IZP0 508 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 SLC35G2Q8TBE7 412 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 C1orf54Q8WWF1 131 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 KIF12Q96FN5 646 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 STK33Q9BYT3 514 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 LRRC4Q9HBW1 653 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 ADARB2Q9NS39 739 aaKnown RBP11.96□□□□□ -0.49
PTPRF-204ENST00000412568 RGPD5Q99666 1765 aa11.96□□□□□ -0.49
PTPRF-204ENST00000412568 ORC1Q13415 861 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 ZNF720Q7Z2F6 126 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 CYP26B1Q9NR63 512 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 TOPAZ1Q8N9V7 1692 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 AFDNP55196 1824 aaKnown RBP11.96□□□□□ -0.5
PTPRF-204ENST00000412568 SSU72P8A0A1W2PR75 194 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 A6NJR5 290 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 ASB14A6NK59 587 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 RARBP10826 455 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 SAT1P21673 171 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 SCP2P22307 547 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 EXOC8Q8IYI6 725 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 MKL1Q969V6 931 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 FMO2Q99518 471 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 MMTAG2Q9BU76 263 aaKnown RBP11.96□□□□□ -0.5
PTPRF-204ENST00000412568 DNAJC18Q9H819 358 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 FAM114A2Q9NRY5 505 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 ARHGAP20Q9P2F6 1191 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 TBX20Q9UMR3 447 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 ADAMTSL3P82987 1691 aa11.96□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC160A6NGH7 325 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 GOLGA8MH3BSY2 632 aa11.95□□□□□ -0.5
PTPRF-204ENST00000412568 PTPRAP18433 802 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms