RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TBC1D7Q9P0N9 293 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 COG5Q9UP83 839 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FRMD4BQ9Y2L6 1034 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 COQ4Q9Y3A0 265 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NR2E1Q9Y466 385 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 USP15Q9Y4E8 981 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 LOC285556D6RIA3 1793 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 LOC102724159A0A0B4J2E5 919 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SPDYE3A6NKU9 549 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PHF20L1A8MW92 1017 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM86B1E9PN63 330 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NDC80O14777 642 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RASGRF2O14827 1237 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 KCNQ2O43526 872 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SUN1O94901 812 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 GCNT3O95395 438 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SHBGP04278 402 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SSBP05455 408 aaKnown RBP eCLIP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM86B2P0C5J1 330 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 COILP38432 576 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 HSPA2P54652 639 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 GHRHRQ02643 423 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CETN1Q12798 172 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NR1H3Q13133 447 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PTK6Q13882 451 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC29A2Q14542 456 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PWP2Q15269 919 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 VPS72Q15906 364 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 PARP6Q2NL67 630 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ZC3H12AQ5D1E8 599 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 DCAF17Q5H9S7 520 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SEL1L2Q5TEA6 688 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 TTBK2Q6IQ55 1244 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NIPA1Q7RTP0 329 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC13A5Q86YT5 568 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM71AQ8IYT1 594 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CCDC63Q8NA47 563 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 CKAP2Q8WWK9 683 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 DHX38Q92620 1227 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 ZBTB9Q96C00 473 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 IFT74Q96LB3 600 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 TMEM237Q96Q45 408 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NACC1Q96RE7 527 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 WDR11Q9BZH6 1224 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 TMEM206Q9H813 350 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 RXFP1Q9HBX9 757 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 UBN1Q9NPG3 1134 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 SRP68Q9UHB9 627 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 NOCTQ9UK39 431 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 GTF3C4Q9UKN8 822 aa6.17□□□□□ -1.42
CCDC88A-203ENST00000412148 TP73O15350 636 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SORBS3O60504 671 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 LYPLA2O95372 231 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RARAP10276 462 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 NQO1P15559 274 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RNASE9P60153 205 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CBLBQ13191 982 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PABPC4Q13310 644 aaKnown RBP eCLIP6.16□□□□□ -1.426e-6■■■■■ 28.1
CCDC88A-203ENST00000412148 SKIDA1Q1XH10 827 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PRR5LQ6MZQ0 368 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PPP1R2P3Q6NXS1 205 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CCDC137Q6PK04 289 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 TMEM179Q6ZVK1 233 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 TDRPQ86YL5 185 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 LRRC34Q8IZ02 419 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 GRK7Q8WTQ7 553 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PSPC1Q8WXF1 523 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 RPGRQ92834 1020 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ARHGEF26Q96DR7 871 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ZDHHC15Q96MV8 337 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 THAP2Q9H0W7 228 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 BHMT2Q9H2M3 363 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 GOLPH3Q9H4A6 298 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 DDX4Q9NQI0 724 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 AVENQ9NQS1 362 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 C15orf41Q9Y2V0 281 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 ARL2BPQ9Y2Y0 163 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SCN4AP35499 1836 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 NFASCO94856 1347 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L15C9J2P7 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L13C9JLJ4 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L11C9JVI0 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L18D6R9N7 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L22D6RA61 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L17D6RBQ6 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L19D6RCP7 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L20D6RJB6 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 OPLAHO14841 1288 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 GNPATO15228 680 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SLITRK3O94933 977 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM13AO94988 1023 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 GTF2H1P32780 548 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 NCALDP61601 193 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CENPCQ03188 943 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L24Q0WX57 530 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 CCDC142Q17RM4 750 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC4A8Q2Y0W8 1093 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 PHLDB3Q6NSJ2 640 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 USP17L6PQ6QN14 398 aa6.16□□□□□ -1.42
CCDC88A-203ENST00000412148 MIGA2Q7L4E1 593 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms