RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CCDC120Q96HB5 630 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 TMEM169Q96HH4 297 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 TNMDQ9H2S6 317 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 CDIP1Q9H305 208 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 DCTPP1Q9H773 170 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 TYW1Q9NV66 732 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 SAGE1Q9NXZ1 904 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 DDX56Q9NY93 547 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 PPARGC1AQ9UBK2 798 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 GULP1Q9UBP9 304 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 ANGEL1Q9UNK9 670 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 RRP7AQ9Y3A4 280 aaKnown RBP6.15□□□□□ -1.42
CLK1-202ENST00000409403 EYSQ5T1H1 3165 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 LAMA3Q16787 3333 aa6.15□□□□□ -1.42
CLK1-202ENST00000409403 MON2Q7Z3U7 1717 aa6.15□□□□□ -1.43
CLK1-202ENST00000409403 FAM208AQ9UK61 1670 aaKnown RBP6.15□□□□□ -1.43
CLK1-202ENST00000409403 ABCC4O15439 1325 aa6.15□□□□□ -1.43
CLK1-202ENST00000409403 TTC21BQ7Z4L5 1316 aa6.15□□□□□ -1.43
CLK1-202ENST00000409403 GOLGA6L4A6NEF3 574 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 GOLGA6L9A6NEM1 432 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 KIAA1324LA8MWY0 1029 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 CTAGE5O15320 804 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 AP5Z1O43299 807 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ERLIN1O75477 346 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 EN2P19622 333 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 SSTR4P31391 388 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 KRT85P78386 507 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ST5P78524 1137 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ERCC6LQ2NKX8 1250 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 HSP90B2PQ58FF3 399 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 DNAJC21Q5F1R6 531 aaKnown RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 RBM43Q6ZSC3 357 aaKnown RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 CEP68Q76N32 757 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 C16orf59Q7L2K0 433 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 NBPF11Q86T75 865 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SAPCD2Q86UD0 394 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 NLRP10Q86W26 655 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 KIF18BQ86Y91 864 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 RPAP2Q8IXW5 612 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 Q8N1Y9 231 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 DEFB123Q8N688 67 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ATL2Q8NHH9 583 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 MARCH2Q9P0N8 246 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.14□□□□□ -1.43
CLK1-202ENST00000409403 ADGRE2Q9UHX3 823 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 LCMT1Q9UIC8 334 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ADAM21Q9UKJ8 722 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SMC3Q9UQE7 1217 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CNPY2Q9Y2B0 182 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CENPFP49454 3210 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 COL5A3P25940 1745 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 ZNF541Q9H0D2 1346 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 PRUNE2Q8WUY3 3088 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CCDC151A5D8V7 595 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CCDC69A6NI79 296 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 WTIPA6NIX2 430 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 M0R2C6 588 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CBX4O00257 560 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SRGAP3O43295 1099 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 FIBPO43427 364 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 HMMRO75330 724 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 PPFIA4O75335 1185 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 TADA3O75528 432 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 EYA4O95677 639 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 PDCP20941 246 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 FUT4P22083 530 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 DNM2P50570 870 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SLC14A2Q15849 920 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 HSF5Q4G112 596 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 ANO6Q4KMQ2 910 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 TMEM177Q53S58 311 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CC2D1AQ6P1N0 951 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 SLC23A3Q6PIS1 610 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SPPL2CQ8IUH8 684 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SYNE4Q8N205 404 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 OXR1Q8N573 874 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 PDZD8Q8NEN9 1154 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 OR2W6PQ8NHA6 318 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 TRMT2BQ96GJ1 504 aaKnown RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 FAM210AQ96ND0 272 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 KCNJ15Q99712 375 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 SCAND2PQ9GZW5 306 aaPredicted RBP6.14□□□□□ -1.43
CLK1-202ENST00000409403 PRO3102Q9H379 93 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 CLSTN2Q9H4D0 955 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.14□□□□□ -1.43
CLK1-202ENST00000409403 CABP5Q9NP86 173 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 HOMER2Q9NSB8 354 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 RNF186Q9NXI6 227 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.14□□□□□ -1.43
CLK1-202ENST00000409403 HACL1Q9UJ83 578 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 TAF6LQ9Y6J9 622 aa6.14□□□□□ -1.43
CLK1-202ENST00000409403 ANKRD31Q8N7Z5 1873 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 MUC3AQ02505 3323 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 A0A1W2PQ27 194 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 A0A1W2PQ64 194 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 A0A1W2PQC6 194 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 A0A1W2PQD8 194 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 H0YHG0 523 aa6.13□□□□□ -1.43
CLK1-202ENST00000409403 U2AF1L5P0DN76 240 aaPredicted RBP6.13□□□□□ -1.43
CLK1-202ENST00000409403 PYGMP11217 842 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms