RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 COLGALT2Q8IYK4 626 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 PHKBQ93100 1093 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 EPC1Q9H2F5 836 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 IFT122Q9HBG6 1241 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 CHST7Q9NS84 486 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 ZSCAN32Q9NX65 697 aa20.27■□□□□ 0.84
UFD1-202ENST00000399523 MSH4O15457 936 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 MAGEA9P43362 315 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 PRKCQQ04759 706 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 CSTF1Q05048 431 aaKnown RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 SNW1Q13573 536 aaKnown RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 LILRA6Q6PI73 481 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 KSR1Q8IVT5 923 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 GPR65Q8IYL9 337 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 REXO1Q8N1G1 1221 aaKnown RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 ST13P5Q8NFI4 369 aaPredicted RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 FGF14Q92915 247 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 LSG1Q9H089 658 aaKnown RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 FAM217BQ9NTX9 383 aaPredicted RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 SEPT9Q9UHD8 586 aaPredicted RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 BRPF3Q9ULD4 1205 aa20.26■□□□□ 0.83
UFD1-202ENST00000399523 SMG5Q9UPR3 1016 aaKnown RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 PRG3Q9Y2Y8 225 aaPredicted RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 MTF2Q9Y483 593 aaPredicted RBP20.26■□□□□ 0.83
UFD1-202ENST00000399523 DCDC2BA2VCK2 349 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 TMEM150BA6NC51 233 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 ZBTB43O43298 467 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 TGM5O43548 720 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 EDIL3O43854 480 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 GAS7O60861 476 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 MAFO75444 373 aaPredicted RBP20.25■□□□□ 0.83
UFD1-202ENST00000399523 ADRB1P08588 477 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 NECTIN1Q15223 517 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 MLF2Q15773 248 aaPredicted RBP20.25■□□□□ 0.83
UFD1-202ENST00000399523 UBXN11Q5T124 520 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 PARM1Q6UWI2 310 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 RSPO2Q6UXX9 243 aaPredicted RBP20.25■□□□□ 0.83
UFD1-202ENST00000399523 PALB2Q86YC2 1186 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 RDM1Q8NG50 284 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 SLC5A5Q92911 643 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 UNC45AQ9H3U1 944 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 C6orf50Q9HD87 102 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 BAHCC1Q9P281 2608 aa20.25■□□□□ 0.83
UFD1-202ENST00000399523 ATRXP46100 2492 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 COL4A3Q01955 1670 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 CHMP2AO43633 222 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 NCLP19338 710 aaKnown RBP20.24■□□□□ 0.83
UFD1-202ENST00000399523 FSHRP23945 695 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 HOXA11P31270 313 aaPredicted RBP20.24■□□□□ 0.83
UFD1-202ENST00000399523 DSC1Q08554 894 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 SLC44A4Q53GD3 710 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 CREB3L3Q68CJ9 461 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 NLRP4Q96MN2 994 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 SH2D3AQ9BRG2 576 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.24■□□□□ 0.83
UFD1-202ENST00000399523 FNIP2Q9P278 1114 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 F5P12259 2224 aa20.24■□□□□ 0.83
UFD1-202ENST00000399523 FAM170BA6NMN3 283 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 CDC27P30260 824 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 OR1G1P47890 313 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 UBXN2BQ14CS0 331 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 LRCH2Q5VUJ6 765 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 TEKT3Q9BXF9 490 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 LTB4R2Q9NPC1 389 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 UBN1Q9NPG3 1134 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 CDH7Q9ULB5 785 aa20.23■□□□□ 0.83
UFD1-202ENST00000399523 TBC1D4O60343 1298 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 ZMYND10O75800 440 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 EXOSC10Q01780 885 aaKnown RBP20.22■□□□□ 0.83
UFD1-202ENST00000399523 SMG8Q8ND04 991 aaKnown RBP20.22■□□□□ 0.83
UFD1-202ENST00000399523 CNNM3Q8NE01 707 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 CCDC12Q8WUD4 166 aaPredicted RBP20.22■□□□□ 0.83
UFD1-202ENST00000399523 CLDN23Q96B33 292 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 CCDC136Q96JN2 1154 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 MBOAT7Q96N66 472 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 JPH2Q9BR39 696 aaPredicted RBP20.22■□□□□ 0.83
UFD1-202ENST00000399523 USP18Q9UMW8 372 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 FAM208BQ5VWN6 2430 aa20.22■□□□□ 0.83
UFD1-202ENST00000399523 GOLGA8AA7E2F4 631 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 GOLGA8BA8MQT2 603 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 F8W810 466 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 PSMD10O75832 226 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 GNA11P29992 359 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 RCAN1P53805 252 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 PFKPQ01813 784 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 B3GNT9Q6UX72 402 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 MTSS1LQ765P7 747 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 MIER3Q7Z3K6 550 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 SRGAP1Q7Z6B7 1085 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 B3GALT6Q96L58 329 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 MINDY3Q9H8M7 445 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 PARD6AQ9NPB6 346 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 COL4A3BPQ9Y5P4 624 aa20.21■□□□□ 0.83
UFD1-202ENST00000399523 TDRD15B5MCY1 1934 aaKnown RBP20.21■□□□□ 0.83
UFD1-202ENST00000399523 ARL5CA6NH57 179 aa20.2■□□□□ 0.82
UFD1-202ENST00000399523 DDX11L8A8MPP1 907 aa20.2■□□□□ 0.82
UFD1-202ENST00000399523 ITGA4P13612 1032 aa20.2■□□□□ 0.82
UFD1-202ENST00000399523 RPS9P46781 194 aaKnown RBP20.2■□□□□ 0.82
UFD1-202ENST00000399523 USP11P51784 963 aa20.2■□□□□ 0.82
UFD1-202ENST00000399523 USP41Q3LFD5 358 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms