RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SNCBQ16143 134 aa22.22■■□□□ 1.15
CLK3-202ENST00000395066 GKAP1Q5VSY0 366 aaPredicted RBP22.22■■□□□ 1.15
CLK3-202ENST00000395066 NSMFQ6X4W1 530 aa22.22■■□□□ 1.15
CLK3-202ENST00000395066 LDHDQ86WU2 507 aa22.22■■□□□ 1.15
CLK3-202ENST00000395066 PARP9Q8IXQ6 854 aa22.22■■□□□ 1.15
CLK3-202ENST00000395066 BCRP11274 1271 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 FGFR4P22455 802 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 KCNJ1P48048 391 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 SLC29A2Q14542 456 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 CPLX4Q7Z7G2 160 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 NOP9Q86U38 636 aaKnown RBP22.21■■□□□ 1.15
CLK3-202ENST00000395066 SLC47A2Q86VL8 602 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 SEMA4AQ9H3S1 761 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 HAUS2Q9NVX0 235 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 GRHL1Q9NZI5 618 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 TMX2Q9Y320 296 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 YDJCA8MPS7 323 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 PYGMP11217 842 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 PTGIRP43119 386 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 IFI35P80217 286 aaPredicted RBP22.21■■□□□ 1.15
CLK3-202ENST00000395066 NEDD9Q14511 834 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 CC2D2BQ6DHV5 1058 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 MIER3Q7Z3K6 550 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 SELENOSQ9BQE4 189 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 RANBP17Q9H2T7 1088 aaKnown RBP22.21■■□□□ 1.15
CLK3-202ENST00000395066 UBE4BO95155 1302 aa22.21■■□□□ 1.15
CLK3-202ENST00000395066 CYP26A1O43174 497 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 ENTPD3O75355 529 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 CHRNB2P17787 502 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 SCTRP47872 440 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 MAP2K1Q02750 393 aaPredicted RBP22.2■■□□□ 1.14
CLK3-202ENST00000395066 LACTB2Q53H82 288 aaPredicted RBP22.2■■□□□ 1.14
CLK3-202ENST00000395066 B3GNT9Q6UX72 402 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 SGSM3Q96HU1 749 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 POP1Q99575 1024 aaKnown RBP22.2■■□□□ 1.14
CLK3-202ENST00000395066 AZI2Q9H6S1 392 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 KCNH7Q9NS40 1196 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 RPTORQ8N122 1335 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 SPP2Q13103 211 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 PPM1KQ8N3J5 372 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 GIMAP7Q8NHV1 300 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 ZSWIM1Q9BR11 485 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 KIFC3Q9BVG8 833 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 CNOT10Q9H9A5 744 aaKnown RBP22.2■■□□□ 1.14
CLK3-202ENST00000395066 HSPBP1Q9NZL4 362 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 ZHX2Q9Y6X8 837 aa22.2■■□□□ 1.14
CLK3-202ENST00000395066 ADRB2P07550 413 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 MMEP08473 750 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 DRD4P21917 467 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 RHOT2Q8IXI1 618 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 CCDC127Q96BQ5 260 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 TLCD1Q96CP7 247 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 MCM8Q9UJA3 840 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 NFIBO00712 420 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 SLC16A4O15374 487 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 PHF2O75151 1096 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 EIF3BP55884 814 aaKnown RBP22.19■■□□□ 1.14
CLK3-202ENST00000395066 DGKZQ13574 1117 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 EPC2Q52LR7 807 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 WLSQ5T9L3 541 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 CCDC50Q8IVM0 306 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 NEK9Q8TD19 979 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 P3H4Q92791 437 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 SAAL1Q96ER3 474 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 KREMEN1Q96MU8 473 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 NAP1L3Q99457 506 aaPredicted RBP22.19■■□□□ 1.14
CLK3-202ENST00000395066 MXRA8Q9BRK3 442 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 TMEM117Q9H0C3 514 aa22.19■■□□□ 1.14
CLK3-202ENST00000395066 PABPC3Q9H361 631 aaKnown RBP22.19■■□□□ 1.14
CLK3-202ENST00000395066 NPM3O75607 178 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 GPC5P78333 572 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 DENND2CQ68D51 928 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 CCDC137Q6PK04 289 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 SLC9A9Q8IVB4 645 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 EPS8L3Q8TE67 593 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 EPS8L1Q8TE68 723 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 SEMA4DQ92854 862 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 MTFR1LQ9H019 292 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 HOMER2Q9NSB8 354 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 MRPL11Q9Y3B7 192 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 CTNND1O60716 968 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 CHN1P15882 459 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 INTS8Q75QN2 995 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 PHLDB2Q86SQ0 1253 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 CBWD2Q8IUF1 395 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 CCT6BQ92526 530 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 TOPORSQ9NS56 1045 aaPredicted RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 TRPC6Q9Y210 931 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 DIS3Q9Y2L1 958 aaKnown RBP22.18■■□□□ 1.14
CLK3-202ENST00000395066 SPATA31A6Q5VVP1 1343 aa22.18■■□□□ 1.14
CLK3-202ENST00000395066 PEX5P50542 639 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 UGCGQ16739 394 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 CCDC38Q502W7 563 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 CCDC25Q86WR0 208 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 UBL4BQ8N7F7 174 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 HVCN1Q96D96 273 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 CHMP6Q96FZ7 201 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 XPO6Q96QU8 1125 aaKnown RBP22.17■■□□□ 1.14
CLK3-202ENST00000395066 VEZTQ9HBM0 779 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 TRPC5Q9UL62 973 aaPredicted RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms