RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 HAPLN2Q9GZV7 340 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 ARHGAP28Q9P2N2 729 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 DMGDHQ9UI17 866 aaKnown RBP16.33■□□□□ 0.2
GPC3-202ENST00000394299 L1RE1Q9UN81 338 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 SGPL1O95470 568 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 POTEJP0CG39 1038 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 CYP2C8P10632 490 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 TNFAIP3P21580 790 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 C10orf76Q5T2E6 689 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 TAF3Q5VWG9 929 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 DPY19L2Q6NUT2 758 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 COPS5Q92905 334 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 ARHGEF26Q96DR7 871 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 RBM12Q9NTZ6 932 aaKnown RBP16.33■□□□□ 0.2
GPC3-202ENST00000394299 AGTPBP1Q9UPW5 1226 aa16.33■□□□□ 0.2
GPC3-202ENST00000394299 LRRIQ4A6NIV6 560 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 CXCL11O14625 94 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 TCF7P36402 384 aaPredicted RBP16.32■□□□□ 0.2
GPC3-202ENST00000394299 ACOT2P49753 483 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 CETN1Q12798 172 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 MKRN3Q13064 507 aaKnown RBP16.32■□□□□ 0.2
GPC3-202ENST00000394299 HSDL1Q3SXM5 330 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 SEZ6Q53EL9 994 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 LRRC57Q8N9N7 239 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 TPCN2Q8NHX9 752 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 HNRNPLLQ8WVV9 542 aaKnown RBP16.32■□□□□ 0.2
GPC3-202ENST00000394299 TATDN2Q93075 761 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 DHX33Q9H6R0 707 aaKnown RBP16.32■□□□□ 0.2
GPC3-202ENST00000394299 ZNF408Q9H9D4 720 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 C17orf75Q9HAS0 396 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 PAPPA2Q9BXP8 1791 aa16.32■□□□□ 0.2
GPC3-202ENST00000394299 MYH9P35579 1960 aaKnown RBP16.32■□□□□ 0.2
GPC3-202ENST00000394299 IGKV6D-21A0A0A0MT36 114 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 TTLL13PA6NNM8 815 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 NF2P35240 595 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 STAT5BP51692 787 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 TUBB4BP68371 445 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 CYP24A1Q07973 514 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 ZBTB41Q5SVQ8 909 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 SCARA3Q6AZY7 606 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 GPAT2Q6NUI2 795 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 SV2AQ7L0J3 742 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 SLC17A8Q8NDX2 589 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 ZNF516Q92618 1163 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 DHX38Q92620 1227 aaKnown RBP16.31■□□□□ 0.2
GPC3-202ENST00000394299 ZBTB10Q96DT7 871 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 ZNF668Q96K58 619 aaPredicted RBP16.31■□□□□ 0.2
GPC3-202ENST00000394299 FBXL18Q96ME1 805 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 KCNH4Q9UQ05 1017 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 CYP26A1O43174 497 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 SNRPFP62306 86 aaKnown RBP16.31■□□□□ 0.2
GPC3-202ENST00000394299 KIF22Q14807 665 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 WDR93Q6P2C0 686 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 FBXO16Q8IX29 292 aaPredicted RBP16.31■□□□□ 0.2
GPC3-202ENST00000394299 SLC35G2Q8TBE7 412 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 MFSD14AQ96MC6 490 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 AGPAT1Q99943 283 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 THAP2Q9H0W7 228 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 PORCNQ9H237 461 aa16.31■□□□□ 0.2
GPC3-202ENST00000394299 BTNL10A8MVZ5 291 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 KCNK3O14649 394 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 MAP2K7O14733 419 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 MAPK13O15264 365 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 POLR3GO15318 223 aaPredicted RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 N4BP1O75113 896 aaKnown RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 PAFAH1B1P43034 410 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 LIG4P49917 911 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 NLRP11P59045 1033 aaKnown RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 BRDTQ58F21 947 aaPredicted RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 KRT39Q6A163 491 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 SLC47A2Q86VL8 602 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 GPD1LQ8N335 351 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 RPGRIP1Q96KN7 1286 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 PCDHB18PQ96TA0 734 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 TARS2Q9BW92 718 aaKnown RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 PDGFCQ9NRA1 345 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 PRDM4Q9UKN5 801 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 P4HA2O15460 535 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 ARL2P36404 184 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 PPIL2Q13356 520 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 USP50Q70EL3 339 aaPredicted RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 RPUSD2Q8IZ73 545 aaKnown RBP16.3■□□□□ 0.2
GPC3-202ENST00000394299 MMGT1Q8N4V1 131 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 HVCN1Q96D96 273 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 EFCC1Q9HA90 598 aa16.3■□□□□ 0.2
GPC3-202ENST00000394299 ERLIN1O75477 346 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 RTP1P59025 263 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 PRPF4BQ13523 1007 aaKnown RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 RPS6KA1Q15418 735 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 DAAM2Q86T65 1068 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 NOP9Q86U38 636 aaKnown RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 HELQQ8TDG4 1101 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 SLC7A3Q8WY07 619 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 SEPT1Q8WYJ6 367 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 NIFKQ9BYG3 293 aaKnown RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 RAB20Q9NX57 234 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 ARID2Q68CP9 1835 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 K7ERI5 159 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 KIF4AO95239 1232 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 HARSP12081 509 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms