RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 PCDHGA4Q9Y5G9 962 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 PCDHA3Q9Y5H8 950 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 PFASO15067 1338 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 TJP3O95049 919 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 PENKP01210 267 aaPredicted RBP15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 ACTN1P12814 892 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 KCNA3P22001 575 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 POLGP54098 1239 aaPredicted RBP15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 MAPKAPK5Q8IW41 473 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 NLGN1Q8N2Q7 840 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 TGFBRAP1Q8WUH2 860 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 NCSTNQ92542 709 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 SERPINB12Q96P63 405 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 CARD9Q9H257 536 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 INTUQ9ULD6 942 aa15.73■□□□□ 0.11
VPS9D1-201ENST00000389386 PITPNM2Q9BZ72 1349 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 USP17L3A6NCW0 530 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 USP17L4A6NCW7 530 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 FOXO6A8MYZ6 492 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 UFL1O94874 794 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 TAC1P20366 129 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 PRKCIP41743 596 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 YARSP54577 528 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 MARSP56192 900 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 ZNF568Q3ZCX4 644 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 DPY19L2Q6NUT2 758 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 USP17L1Q7RTZ2 530 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 GBP5Q96PP8 586 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.72■□□□□ 0.115e-9■□□□□ 10.9
VPS9D1-201ENST00000389386 PARP2Q9UGN5 583 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 IRS2Q9Y4H2 1338 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 MAGEA13PA6NCF6 341 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 GNA14O95837 355 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 HOXA7P31268 230 aaPredicted RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 STX2P32856 288 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 SERPINB4P48594 390 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 KHDC1Q4VXA5 237 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 SNX30Q5VWJ9 437 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 NRG4Q8WWG1 115 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 SCG3Q8WXD2 468 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 C18orf8Q96DM3 657 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 RUNDC3BQ96NL0 473 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 PNMA5Q96PV4 448 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 PITPNM3Q9BZ71 974 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 SUDS3Q9H7L9 328 aaPredicted RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 PDP2Q9P2J9 529 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 STK17AQ9UEE5 414 aa15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 ARMCX3Q9UH62 379 aaPredicted RBP15.72■□□□□ 0.11
VPS9D1-201ENST00000389386 ATAD5Q96QE3 1844 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 TRAFD1O14545 582 aaPredicted RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 ANXA13P27216 316 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 FOXN2P32314 431 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 TFAP4Q01664 338 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 DNAJC14Q6Y2X3 702 aaPredicted RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 SYCP3Q8IZU3 236 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 LARP4BQ92615 738 aaKnown RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 LRRC37BQ96QE4 947 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 BLOC1S6Q9UL45 172 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 DDX3XO00571 662 aaKnown RBP eCLIP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 BRAFP15056 766 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 SESN3P58005 492 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 ZNF211Q13398 564 aaPredicted RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 GIT2Q14161 759 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 ZC2HC1CQ53FD0 456 aaPredicted RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 GALNT17Q6IS24 598 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 RBM46Q8TBY0 533 aaKnown RBP15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 TLE6Q9H808 572 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 PREBQ9HCU5 417 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 OSGEPQ9NPF4 335 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 STK32BQ9NY57 414 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 ZNF232Q9UNY5 417 aa15.71■□□□□ 0.11
VPS9D1-201ENST00000389386 CCNT1O60563 726 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 PCP11498 1178 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 UCHL3P15374 230 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 SLC9A1P19634 815 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 TPP2P29144 1249 aaPredicted RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 BAG6P46379 1132 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 MCL1Q07820 350 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 LETM2Q2VYF4 491 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 CNPY1Q3B7I2 92 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 DDX12PQ92771 950 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 VCX3BQ9H321 246 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 CPVLQ9H3G5 476 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 VCX3AQ9NNX9 186 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 PODXLO00592 558 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 MAPK13O15264 365 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 PHF2O75151 1096 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 KRT13P13646 458 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 ATP5DP30049 168 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 GALCP54803 685 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 PPATQ06203 517 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 KCNH2Q12809 1159 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 TRMT10CQ7L0Y3 403 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 ZC3H18Q86VM9 953 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 ARHGAP18Q8N392 663 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 ART4Q93070 314 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 MMADHCQ9H3L0 296 aaPredicted RBP15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 GALNT8Q9NY28 637 aa15.7■□□□□ 0.1
VPS9D1-201ENST00000389386 PCYOX1Q9UHG3 505 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms