RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 BTBD2Q9BX70 525 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 MLXIPQ9HAP2 919 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 GALNT8Q9NY28 637 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 WHRNQ9P202 907 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 SPG7Q9UQ90 795 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 HDAC5Q9UQL6 1122 aa0.35□□□□□ -2.35
RNU6-540P-201ENST00000384622 B4DGG1 531 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 ACOT7O00154 380 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PEX1O43933 1283 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 TOX4O94842 621 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 TOMM40O96008 361 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PF4P02776 101 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 VSIG10L2P0DP72 767 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PRF1P14222 555 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 CD19P15391 556 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 RBM25P49756 843 aaKnown RBP0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 LMNB2Q03252 620 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 GRB10Q13322 594 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 RBM39Q14498 530 aaKnown RBP0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 SF1Q15637 639 aaKnown RBP0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 FAM153CQ494X1 144 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 GLDNQ6ZMI3 551 aaPredicted RBP0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PIM3Q86V86 326 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 CMTM4Q8IZR5 234 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 VSIG10Q8N0Z9 540 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 B4GALNT2Q8NHY0 566 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 NUDCD2Q8WVJ2 157 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 DIO2Q92813 273 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 HES6Q96HZ4 224 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 AARSD1Q9BTE6 412 aaKnown RBP0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 GFRA4Q9GZZ7 299 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 FAM234AQ9H0X4 552 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 ACSS2Q9NR19 701 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PCDHA2Q9Y5H9 948 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 NOX1Q9Y5S8 564 aa0.34□□□□□ -2.36
RNU6-540P-201ENST00000384622 PRR23AA6NEV1 266 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 SRRM3A6NNA2 597 aaPredicted RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 H3BRB1 525 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 HOXA3O43365 443 aaPredicted RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 CBFA2T2O43439 604 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 CFIP05156 583 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 JUNP05412 331 aaKnown RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 PSG1P11464 419 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 PTGS1P23219 599 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 GRIA3P42263 894 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 MAPK10P53779 464 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 ERVK11-1P61568 191 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 CWF19L2Q2TBE0 894 aaKnown RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 KANK2Q63ZY3 851 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 KAZNQ674X7 775 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 PELI3Q8N2H9 469 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 GALNT16Q8N428 558 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 FBXO27Q8NI29 283 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 FBF1Q8TES7 1133 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 PTCD3Q96EY7 689 aaKnown RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 HAPLN3Q96S86 360 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 TRAF4Q9BUZ4 470 aaPredicted RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 TUT1Q9H6E5 874 aaKnown RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 BRMS1Q9HCU9 246 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 KCTD5Q9NXV2 234 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 CGGBP1Q9UFW8 167 aaPredicted RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 USP15Q9Y4E8 981 aaPredicted RBP0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 TELO2Q9Y4R8 837 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 NFS1Q9Y697 457 aa0.33□□□□□ -2.36
RNU6-540P-201ENST00000384622 E5RJQ4 531 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 TLR3O15455 904 aaKnown RBP0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 PPM1BO75688 479 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 DNAH10OSP0CZ25 163 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 FOLR3P41439 243 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 ECE1P42892 770 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 TRIM25Q14258 630 aaKnown RBP0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 FCN2Q15485 313 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 LRRFIP1Q32MZ4 808 aaKnown RBP0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 PEG10Q86TG7 708 aaKnown RBP0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 RASAL3Q86YV0 1011 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 CCDC103Q8IW40 242 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 ARHGEF39Q8N4T4 335 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 RCBTB1Q8NDN9 531 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 COQ8BQ96D53 544 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 JAM3Q9BX67 310 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 GBP3Q9H0R5 595 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 OR10A5Q9H207 317 aa0.32□□□□□ -2.36
RNU6-540P-201ENST00000384622 TARM1B6A8C7 271 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 F6X3S4 739 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 EXTL3O43909 919 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 ITGAVP06756 1048 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 CRKP46108 304 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 KCNC3Q14003 757 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 UBXN2BQ14CS0 331 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 ZYXQ15942 572 aaKnown RBP0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 NFE2Q16621 373 aaPredicted RBP0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 PROSER3Q2NL68 480 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 XKR6Q5GH73 641 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 INTS3Q68E01 1043 aaKnown RBP0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 KRTAP5-10Q6L8G5 202 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 LILRB2Q8N423 598 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 GOLM1Q8NBJ4 401 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 UHMK1Q8TAS1 419 aaKnown RBP0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 MED30Q96HR3 178 aa0.31□□□□□ -2.36
RNU6-540P-201ENST00000384622 SPRY4Q9C004 299 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms