RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 AGPAT3Q9NRZ7 376 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 ARHGAP28Q9P2N2 729 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 SUCLA2Q9P2R7 463 aaPredicted RBP13.55□□□□□ -0.24
CIITA-202ENST00000381835 KCNG1Q9UIX4 513 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 MAP2K7O14733 419 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 RPL13P26373 211 aaKnown RBP13.55□□□□□ -0.24
CIITA-202ENST00000381835 CYP2J2P51589 502 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 GJA9P57773 515 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 LAMTOR4Q0VGL1 99 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 TUBB2AQ13885 445 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 MFSD10Q14728 455 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 HNRNPLLQ8WVV9 542 aaKnown RBP13.55□□□□□ -0.24
CIITA-202ENST00000381835 TUBB2BQ9BVA1 445 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 SETD4Q9NVD3 440 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 ADAM21Q9UKJ8 722 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 TRIM17Q9Y577 477 aa13.55□□□□□ -0.24
CIITA-202ENST00000381835 COL1A2P08123 1366 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 H3BQF6 201 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 MAGEB2O15479 319 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 ERLIN1O75477 346 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 TUBB4BP68371 445 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 MXD4Q14582 209 aaPredicted RBP13.54□□□□□ -0.24
CIITA-202ENST00000381835 MTHFD1LQ6UB35 978 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 HDXQ7Z353 690 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 MAP4K3Q8IVH8 894 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 EXOC4Q96A65 974 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 CCDC51Q96ER9 411 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 NOC4LQ9BVI4 516 aaKnown RBP13.54□□□□□ -0.24
CIITA-202ENST00000381835 EXOC7Q9UPT5 735 aa13.54□□□□□ -0.24
CIITA-202ENST00000381835 H0YCG3 227 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 AKAP3O75969 853 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 SMIM10L2AP0DMW4 78 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 SMIM10L2BP0DMW5 78 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 LMAN1P49257 510 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 CASP4P49662 377 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 PSEN2P49810 448 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 FXR1P51114 621 aaKnown RBP eCLIP13.53□□□□□ -0.24
CIITA-202ENST00000381835 PURAQ00577 322 aaKnown RBP13.53□□□□□ -0.24
CIITA-202ENST00000381835 ZSCAN26Q16670 478 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 TAS1R3Q7RTX0 852 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 ZC3H3Q8IXZ2 948 aaKnown RBP13.53□□□□□ -0.24
CIITA-202ENST00000381835 SLC35F6Q8N357 371 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 RNF149Q8NC42 400 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 GOLGA5Q8TBA6 731 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 PXYLP1Q8TE99 480 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 HVCN1Q96D96 273 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 BICD1Q96G01 975 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 NLRP4Q96MN2 994 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 PCIF1Q9H4Z3 704 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 XPNPEP3Q9NQH7 507 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 USP20Q9Y2K6 914 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 K7ERI5 159 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 GYPCP04921 128 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 CAPN2P17655 700 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 C1QTNF8P60827 252 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 UBXN1Q04323 297 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 STRN3Q13033 797 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 BEND6Q5SZJ8 279 aaPredicted RBP13.53□□□□□ -0.24
CIITA-202ENST00000381835 MARCH8Q5T0T0 291 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 MSANTD4Q8NCY6 345 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 LMBR1Q8WVP7 490 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 PPP1R16BQ96T49 567 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 PNKPQ96T60 521 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 AKT3Q9Y243 479 aa13.53□□□□□ -0.24
CIITA-202ENST00000381835 ANKRD63C9JTQ0 380 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 HNRNPDLO14979 420 aaKnown RBP13.52□□□□□ -0.24
CIITA-202ENST00000381835 GNA14O95837 355 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 INHAP05111 366 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 TMOD1P28289 359 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 MAP3K21Q5TCX8 1036 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 CXCL17Q6UXB2 119 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 TMTC1Q8IUR5 882 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 RDH13Q8NBN7 331 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 ACRBPQ8NEB7 543 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 CBWD1Q9BRT8 395 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 PDE11AQ9HCR9 933 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 PSD3Q9NYI0 1048 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 RAB21Q9UL25 225 aa13.52□□□□□ -0.24
CIITA-202ENST00000381835 ITIH6Q6UXX5 1313 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 NRCAMQ92823 1304 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 RRN3P2A6NIE6 340 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 LGALS16A8MUM7 142 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 HAS3O00219 553 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 EXOC3O60645 756 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 VTNP04004 478 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 RHOXF2BP0C7M4 288 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 EPB41P11171 864 aaKnown RBP13.52□□□□□ -0.25
CIITA-202ENST00000381835 GRK4P32298 578 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 MAN2A1Q16706 1144 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 MIIPQ5JXC2 388 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 NFRKBQ6P4R8 1299 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 SLAIN1Q8ND83 568 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 NAPGQ99747 312 aaPredicted RBP13.52□□□□□ -0.25
CIITA-202ENST00000381835 RHOXF2Q9BQY4 288 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 KATNAL1Q9BW62 490 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 TSPYL1Q9H0U9 437 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 UPF3AQ9H1J1 476 aaKnown RBP13.52□□□□□ -0.25
CIITA-202ENST00000381835 CWC15Q9P013 229 aaKnown RBP13.52□□□□□ -0.25
CIITA-202ENST00000381835 VPS18Q9P253 973 aa13.52□□□□□ -0.25
CIITA-202ENST00000381835 PTCH2Q9Y6C5 1203 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms