RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KCTD16Q68DU8 428 aa14.47□□□□□ -0.09
CCDC3-202ENST00000378839 SNRNP48Q6IEG0 339 aaKnown RBP14.47□□□□□ -0.09
CCDC3-202ENST00000378839 ISCUQ9H1K1 167 aa14.47□□□□□ -0.09
CCDC3-202ENST00000378839 XPNPEP1Q9NQW7 623 aa14.47□□□□□ -0.09
CCDC3-202ENST00000378839 MAP3K20Q9NYL2 800 aaKnown RBP14.47□□□□□ -0.09
CCDC3-202ENST00000378839 TMOD4Q9NZQ9 345 aa14.47□□□□□ -0.09
CCDC3-202ENST00000378839 ZNF112Q9UJU3 913 aa14.47□□□□□ -0.09
CCDC3-202ENST00000378839 TTI1O43156 1089 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 CYP26A1O43174 497 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 SHOX2O60902 331 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 WNT7BP56706 349 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 TGFB2P61812 414 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 TNNC1P63316 161 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 PAK2Q13177 524 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 DNAJC21Q5F1R6 531 aaKnown RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 ALS2CLQ60I27 953 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 EPS8L1Q8TE68 723 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 DHX38Q92620 1227 aaKnown RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 KRT35Q92764 455 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 WRNIP1Q96S55 665 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 PDLIM7Q9NR12 457 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 ADAMTS5Q9UNA0 930 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 PHIPQ8WWQ0 1821 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 DENND3A2RUS2 1198 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 ANKRD62A6NC57 917 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 FGGP02679 453 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 JAK3P52333 1124 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 TNFAIP1Q13829 316 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 MAP4K3Q8IVH8 894 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 CCDC60Q8IWA6 550 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 FAM71AQ8IYT1 594 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 SCYL3Q8IZE3 742 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 MREGQ8N565 214 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 HELQQ8TDG4 1101 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 CTNNBL1Q8WYA6 563 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 BTBD6Q96KE9 485 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 TAF1DQ9H5J8 278 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 ANKEF1Q9NU02 776 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 PPP1R1BQ9UD71 204 aaPredicted RBP14.46□□□□□ -0.09
CCDC3-202ENST00000378839 AMFRQ9UKV5 643 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 ZNF541Q9H0D2 1346 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 LCTP09848 1927 aa14.46□□□□□ -0.09
CCDC3-202ENST00000378839 MMEP08473 750 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 KRT76Q01546 638 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 ALCAMQ13740 583 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 R3HDM1Q15032 1099 aaKnown RBP14.46□□□□□ -0.1
CCDC3-202ENST00000378839 SWSAP1Q6NVH7 229 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 ZNF280CQ8ND82 737 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 TAS1R2Q8TE23 839 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 PARD3BQ8TEW8 1205 aa14.46□□□□□ -0.1
CCDC3-202ENST00000378839 DAPK3O43293 454 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 USP8P40818 1118 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 MXI1P50539 228 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 SCARA3Q6AZY7 606 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 SYCE1Q8N0S2 351 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 OR2W6PQ8NHA6 318 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 LMBR1Q8WVP7 490 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 TATDN2Q93075 761 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 CALR3Q96L12 384 aaKnown RBP14.45□□□□□ -0.1
CCDC3-202ENST00000378839 PCDHA10Q9Y5I2 948 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 ALG6Q9Y672 507 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 GRIN2DO15399 1336 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 ZNFX1Q9P2E3 1918 aaKnown RBP14.45□□□□□ -0.1
CCDC3-202ENST00000378839 SSC5DA1L4H1 1573 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 FMO1Q01740 532 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 PRPF4BQ13523 1007 aaKnown RBP14.45□□□□□ -0.1
CCDC3-202ENST00000378839 FAM76AQ8TAV0 307 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 TRPM4Q8TD43 1214 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 SENP7Q9BQF6 1050 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 TRIM51Q9BSJ1 452 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 PI4K2AQ9BTU6 479 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 RABEP2Q9H5N1 569 aa14.45□□□□□ -0.1
CCDC3-202ENST00000378839 H0YGN5 161 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 MAPK13O15264 365 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 P4HA2O15460 535 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 HSF2BPO75031 334 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 ATP4AP20648 1035 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 SFNP31947 248 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 DSG3P32926 999 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 HSPA9P38646 679 aaKnown RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 ANGEL2Q5VTE6 544 aaKnown RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 ATP8B4Q8TF62 1192 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 CEP170P1Q96L14 293 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 NTPCRQ9BSD7 190 aaKnown RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 CYP39A1Q9NYL5 469 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 NFS1Q9Y697 457 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 ARID2Q68CP9 1835 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 FZD9O00144 591 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 GRIN3BO60391 1043 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 CCND2P30279 289 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 IRAK1P51617 712 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 PPM1KQ8N3J5 372 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 ZNF516Q92618 1163 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 RNPC3Q96LT9 517 aaKnown RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 MTFR1LQ9H019 292 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 A1CFQ9NQ94 594 aaKnown RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 KMT5AQ9NQR1 393 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 TTC7AQ9ULT0 858 aaPredicted RBP14.44□□□□□ -0.1
CCDC3-202ENST00000378839 RFX1P22670 979 aa14.44□□□□□ -0.1
CCDC3-202ENST00000378839 RPS12P25398 132 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms