RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 SLC16A4O15374 487 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 KRT14P02533 472 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 IGKV5-2P06315 115 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 GUCY1A2P33402 732 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 MDH1P40925 334 aaKnown RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 PDIA2Q13087 525 aaKnown RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 KNOP1Q1ED39 458 aaKnown RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 TAF1BQ53T94 588 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 PRR23CQ6ZRP0 262 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 ZBED8Q8IZ13 594 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 MAGEB10Q96LZ2 347 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 VPS11Q9H270 941 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 BSDC1Q9NW68 430 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 WDR19Q8NEZ3 1342 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 PRR36Q9H6K5 1346 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 GLI2P10070 1586 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 FTLP02792 175 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 SP100P23497 879 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 VCPP55072 806 aaKnown RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 ICA1LQ8NDH6 482 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 ARL8AQ96BM9 186 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 TMEM47Q9BQJ4 181 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 POLR3CQ9BUI4 534 aaPredicted RBP12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 NRKQ7Z2Y5 1582 aa12.73□□□□□ -0.37
PCDHA9-201ENST00000378122 DDHD2O94830 711 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SNAPC2Q13487 334 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 DCAF4Q8WV16 495 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SH3GL3Q99963 347 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 FAM213AQ9BRX8 229 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 CLCA2Q9UQC9 943 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 CROCC2H7BZ55 1655 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 TET3O43151 1660 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 POTEFA5A3E0 1075 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 H3BRJ5 948 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 POTEIP0CG38 1075 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 NNMTP40261 264 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 RC3H1Q5TC82 1133 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 E4F1Q66K89 784 aaPredicted RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 POTEGQ6S5H5 508 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 POTEEQ6S8J3 1075 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 TMEM270Q6UE05 265 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 TRIM59Q8IWR1 403 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SIX5Q8N196 739 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ARMC2Q8NEN0 867 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 CCDC124Q96CT7 223 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 IL17RAQ96F46 866 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ZMAT2Q96NC0 199 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 TTC1Q99614 292 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 IRX2Q9BZI1 471 aaPredicted RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SARS2Q9NP81 518 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 RAD18Q9NS91 495 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 HPCAL4Q9UM19 191 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ERVV-1B6SEH8 477 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 RARBP10826 455 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 VAMP7P51809 220 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ARFIP2P53365 341 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ANKRD40Q6AI12 368 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ACAD11Q709F0 780 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 BHMTQ93088 406 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SLC13A1Q9BZW2 595 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 NDE1Q9NXR1 346 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 STRIP2Q9ULQ0 834 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L15C9J2P7 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L10C9JJH3 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L13C9JLJ4 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L11C9JVI0 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L18D6R9N7 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L22D6RA61 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L17D6RBQ6 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L19D6RCP7 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L20D6RJB6 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 MEFVO15553 781 aaPredicted RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 CHRNA3P32297 505 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 COPS2P61201 443 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L24Q0WX57 530 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 KRT39Q6A163 491 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 USP17L6PQ6QN14 398 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 DEFB128Q7Z7B8 93 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SH2D3CQ8N5H7 860 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 NCLNQ969V3 563 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 C11orf70Q9BRQ4 267 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 NGRNQ9NPE2 291 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ZBTB5O15062 677 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 GPSM2P81274 684 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 KRT17Q04695 432 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 FMR1Q06787 632 aaKnown RBP eCLIP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 NR1H3Q13133 447 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 GRM4Q14833 912 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 SURF1Q15526 300 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 CALR3Q96L12 384 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ALDH8A1Q9H2A2 487 aaPredicted RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 ZRANB2O95218 330 aaKnown RBP eCLIP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 IRF1P10914 325 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 HSPA9P38646 679 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 OCA2Q04671 838 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 OR6B3Q8NGW1 331 aa12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 PARK7Q99497 189 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 DHX36Q9H2U1 1008 aaKnown RBP12.72□□□□□ -0.37
PCDHA9-201ENST00000378122 LRRC7Q96NW7 1537 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms