RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 USP17L2Q6R6M4 530 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 FBXL5Q9UKA1 691 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SRPRBQ9Y5M8 271 aaKnown RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ICE2Q659A1 982 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 PKN3Q6P5Z2 889 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 TNIP2Q8NFZ5 429 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 CYGBQ8WWM9 190 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 COA7Q96BR5 231 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 SLAIN2Q9P270 581 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 TTC7AQ9ULT0 858 aaPredicted RBP13.2□□□□□ -0.3
VPS13A-204ENST00000376634 ICE1Q9Y2F5 2266 aa13.2□□□□□ -0.3
VPS13A-204ENST00000376634 GOLGA8IPA6NC78 632 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 GOLGA8JA6NMD2 632 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 RAD17O75943 681 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TJP2Q9UDY2 1190 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 SESN1Q9Y6P5 492 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 EIF2AK2P19525 551 aaKnown RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 PKP1Q13835 747 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TFDP2Q14188 446 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 FAM161BQ96MY7 647 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 IP6K2Q9UHH9 426 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 ARHGEF5Q12774 1597 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 CTIFO43310 598 aaKnown RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 MFAP3LO75121 409 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 NPM3O75607 178 aaKnown RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 RINLQ6ZS11 566 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TMEM35BQ8NCS4 154 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 WDR48Q8TAF3 677 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TBC1D23Q9NUY8 699 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 SLC9A2Q9UBY0 812 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 MEFVO15553 781 aaPredicted RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 RAD51Q06609 339 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 USE1Q9NZ43 259 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 PRG3Q9Y2Y8 225 aaPredicted RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 LOC102724428A0A0B4J2F2 783 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 SIK1P57059 783 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 PIGOQ8TEQ8 1089 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 M0QYV0 167 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 KRT16P08779 473 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 MKRN3Q13064 507 aaKnown RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 RESP18Q5W5W9 173 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 RMDN3Q96TC7 470 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 UBA6A0AVT1 1052 aaPredicted RBP13.19□□□□□ -0.3
VPS13A-204ENST00000376634 GPC5P78333 572 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TRIM72Q6ZMU5 477 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 SLC10A4Q96EP9 437 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 AGBL1Q96MI9 1066 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 DBNDD1Q9H9R9 158 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 PREX2Q70Z35 1606 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 CYP27A1Q02318 531 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 MB21D1Q8N884 522 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 TMEM245Q9H330 911 aa13.19□□□□□ -0.3
VPS13A-204ENST00000376634 ABCB11O95342 1321 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PNMA6AP0CW24 399 aaPredicted RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 GTF2H3Q13889 308 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF507Q8TCN5 953 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PRPF3O43395 683 aaKnown RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 ZNF564Q8TBZ8 553 aaPredicted RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 SH3GL2Q99962 352 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 STMN3Q9NZ72 180 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 CNOT8Q9UFF9 292 aaKnown RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 BLOC1S6Q9UL45 172 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 TSC22D4Q9Y3Q8 395 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 GOLGA8TH3BQL2 631 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 CHUKO15111 745 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 GUCA1CO95843 209 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PSMD7P51665 324 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 ORAI2Q96SN7 254 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 WNT8AQ9H1J5 351 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 CCDC22O60826 627 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 HAUS5O94927 633 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 HPCAP84074 193 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 MXD3Q9BW11 206 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 RGL1Q9NZL6 768 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 BBOX1O75936 387 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 TAP1Q03518 808 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PLEKHA8Q96JA3 519 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PRDM5Q9NQX1 630 aaPredicted RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 ATP7BP35670 1465 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 GRID2IPA4D2P6 1211 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 GNA15P30679 374 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PPP2R2AP63151 447 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 PPM1NQ8N819 430 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 SAMSN1Q9NSI8 373 aaKnown RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 XXYLT1Q8NBI6 393 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 LZTS1Q9Y250 596 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 CAB39Q9Y376 341 aaPredicted RBP13.18□□□□□ -0.3
VPS13A-204ENST00000376634 TLR2O60603 784 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 CCNE1P24864 410 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 YAF2Q8IY57 180 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 SDK1Q7Z5N4 2213 aa13.18□□□□□ -0.3
VPS13A-204ENST00000376634 KNL1Q8NG31 2342 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 CFAP73A6NFT4 308 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 UBE2SQ16763 222 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 KCNV2Q8TDN2 545 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 RMDN1Q96DB5 314 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ATXN7L3BQ96GX2 97 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 MRPL1Q9BYD6 325 aaKnown RBP13.17□□□□□ -0.3
VPS13A-204ENST00000376634 ABHD10Q9NUJ1 306 aa13.17□□□□□ -0.3
VPS13A-204ENST00000376634 GUCY1A3Q02108 690 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms