RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 SEMA4AQ9H3S1 761 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 UNC45AQ9H3U1 944 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 KCNMB3Q9NPA1 279 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 KANSL3Q9P2N6 904 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 SEPT9Q9UHD8 586 aaPredicted RBP13.55□□□□□ -0.24
LSM2-208ENST00000375661 DPP7Q9UHL4 492 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 PIN4Q9Y237 131 aaKnown RBP13.55□□□□□ -0.24
LSM2-208ENST00000375661 SSX2IPQ9Y2D8 614 aa13.55□□□□□ -0.24
LSM2-208ENST00000375661 SPDYE4A6NLX3 237 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 MAFO75444 373 aaPredicted RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 CSDE1O75534 798 aaKnown RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 PSMD10O75832 226 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 KLRC2P26717 231 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 SLC11A1P49279 550 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 ZNF174Q15697 407 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 MTERF2Q49AM1 385 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 KANK3Q6NY19 840 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 FAM173BQ6P4H8 233 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 ELMSAN1Q6PJG2 1045 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 MIER3Q7Z3K6 550 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 BRAPQ7Z569 592 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 ADSSL1Q8N142 457 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 BCL7CQ8WUZ0 217 aaPredicted RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 HAS1Q92839 578 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 LPPQ93052 612 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 NXPE3Q969Y0 559 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 TMEM60Q9H2L4 133 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 KCNK12Q9HB15 430 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 MRPL17Q9NRX2 175 aaKnown RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 SUCLA2Q9P2R7 463 aaPredicted RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 WNT16Q9UBV4 365 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 NOL7Q9UMY1 257 aaKnown RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 INPP5FQ9Y2H2 1132 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 ZDHHC9Q9Y397 364 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 PCDHB6Q9Y5E3 794 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 CNTNAP2Q9UHC6 1331 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 RIF1Q5UIP0 2472 aaKnown RBP13.54□□□□□ -0.24
LSM2-208ENST00000375661 FANCMQ8IYD8 2048 aa13.54□□□□□ -0.24
LSM2-208ENST00000375661 MYO15AQ9UKN7 3530 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 SPTBN4Q9H254 2564 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 DOCK8Q8NF50 2099 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 CHMP2AO43633 222 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 LILRB3O75022 631 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 STBD1O95210 358 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 C1RP00736 705 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 ALDH2P05091 517 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 CNPP09543 421 aaKnown RBP13.53□□□□□ -0.24
LSM2-208ENST00000375661 ZSCAN22P10073 491 aaPredicted RBP13.53□□□□□ -0.24
LSM2-208ENST00000375661 PDIA4P13667 645 aaKnown RBP13.53□□□□□ -0.24
LSM2-208ENST00000375661 MCM7P33993 719 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 DDIT3P35638 169 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 ID4P47928 161 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 ANGPT1Q15389 498 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 RILPL1Q5EBL4 403 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 B3GNT9Q6UX72 402 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 CATSPER4Q7RTX7 472 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 MRPL10Q7Z7H8 261 aaKnown RBP13.53□□□□□ -0.24
LSM2-208ENST00000375661 RHPN2Q8IUC4 686 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 EXOC8Q8IYI6 725 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 C4orf32Q8N8J7 132 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 DTWD2Q8NBA8 298 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 STAMQ92783 540 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 MTMR9Q96QG7 549 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 VN1R3Q9BXE9 311 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.53□□□□□ -0.24
LSM2-208ENST00000375661 AGPAT5Q9NUQ2 364 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 DNAJB4Q9UDY4 337 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 FBXL21Q9UKT6 434 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 PPME1Q9Y570 386 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 PCDHB2Q9Y5E7 798 aa13.53□□□□□ -0.24
LSM2-208ENST00000375661 MEIS3P2A8K0S8 358 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 TBX3O15119 743 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 PI15O43692 258 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 NEMFO60524 1076 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 PAPLNO95428 1278 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 ORC2Q13416 577 aaPredicted RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 FOXD4L5Q5VV16 416 aaPredicted RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 AGMOQ6ZNB7 445 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 ZNF280BQ86YH2 543 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 SIX5Q8N196 739 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 CNNM3Q8NE01 707 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 FOXD4L4Q8WXT5 416 aaPredicted RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 FAM193BQ96PV7 902 aaPredicted RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 GBP3Q9H0R5 595 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 ZSCAN16Q9H4T2 348 aaPredicted RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 RSAD1Q9HA92 442 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 IFT122Q9HBG6 1241 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 WDR6Q9NNW5 1121 aaKnown RBP13.52□□□□□ -0.25
LSM2-208ENST00000375661 UBN1Q9NPG3 1134 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 FAN1Q9Y2M0 1017 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 ARID2Q68CP9 1835 aa13.52□□□□□ -0.25
LSM2-208ENST00000375661 DKC1O60832 514 aaKnown RBP eCLIP13.51□□□□□ -0.25
LSM2-208ENST00000375661 DDHD2O94830 711 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 F13A1P00488 732 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 SOD2P04179 222 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 URODP06132 367 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 ADH1AP07327 375 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 PSMC5P62195 406 aa13.51□□□□□ -0.25
LSM2-208ENST00000375661 LONRF3Q496Y0 759 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms