RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 DMAC2Q9NW81 257 aa22.73■■□□□ 1.23
UPF3A-202ENST00000375299 C6orf229H3BNL8 230 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 EML1O00423 815 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 IGF2BP3O00425 579 aaKnown RBP eCLIP22.72■■□□□ 1.23
UPF3A-202ENST00000375299 RAD21O60216 631 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 GPC5P78333 572 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 GTF2IP78347 998 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 BNIP1Q12981 228 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 LONRF1Q17RB8 773 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 ZNF568Q3ZCX4 644 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 CCDC25Q86WR0 208 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 KCTD17Q8N5Z5 321 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 WNT8AQ9H1J5 351 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 MTUS1Q9ULD2 1270 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 PTPN22Q9Y2R2 807 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 COPS2P61201 443 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 MESDQ14696 234 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 SLC13A5Q86YT5 568 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-202ENST00000375299 PIGOQ8TEQ8 1089 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 ARHGEF2Q92974 986 aaKnown RBP22.72■■□□□ 1.23
UPF3A-202ENST00000375299 CDC42EP4Q9H3Q1 356 aaKnown RBP22.72■■□□□ 1.23
UPF3A-202ENST00000375299 PARVGQ9HBI0 331 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 BATF3Q9NR55 127 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 AGPAT3Q9NRZ7 376 aa22.72■■□□□ 1.23
UPF3A-202ENST00000375299 TCRBV7S2A1N4TA0A589 114 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 TMEM120BA0PK00 339 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 PYGMP11217 842 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 CIITAP33076 1130 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 C1orf186Q6ZWK4 172 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 MORC4Q8TE76 937 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 DCAF4Q8WV16 495 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 SERPINB12Q96P63 405 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 O00370 1275 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 BCRP11274 1271 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 HOXA10P31260 410 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-202ENST00000375299 CALCOCO2Q13137 446 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 VSTM1Q6UX27 236 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 OTUD6AQ7L8S5 288 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 LMO3Q8TAP4 145 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 KLHL29Q96CT2 875 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 FIZ1Q96SL8 496 aa22.71■■□□□ 1.23
UPF3A-202ENST00000375299 TRIM6Q9C030 488 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-202ENST00000375299 GJB6O95452 261 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 FOSP01100 380 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 CCND1P24385 295 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 ATP5DP30049 168 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 BFSP1Q12934 665 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 SIX1Q15475 284 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 NUGGCQ68CJ6 796 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 C12orf50Q8NA57 414 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 CD101Q93033 1021 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 DDX23Q9BUQ8 820 aaKnown RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 MAP2K1Q02750 393 aaPredicted RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 RPUSD2Q8IZ73 545 aaKnown RBP22.7■■□□□ 1.22
UPF3A-202ENST00000375299 PLCD4Q9BRC7 762 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 AMNQ9BXJ7 453 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 ARL2BPQ9Y2Y0 163 aa22.7■■□□□ 1.22
UPF3A-202ENST00000375299 MTA2O94776 668 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 CREB1P16220 341 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 KCNJ1P48048 391 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 RRP1BQ14684 758 aaKnown RBP22.69■■□□□ 1.22
UPF3A-202ENST00000375299 SLFN13Q68D06 897 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 STXBP4Q6ZWJ1 553 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 ZNF720Q7Z2F6 126 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 SPATA21Q7Z572 469 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 IFT74Q96LB3 600 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 ARHGEF3Q9NR81 526 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 SEL1LQ9UBV2 794 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 LTBP1Q14766 1721 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 CCDC189A1A4V9 331 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 NEBLO76041 1014 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 ECEL1O95672 775 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 HLA-DOAP06340 250 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 KRT16P08779 473 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 MIGA2Q7L4E1 593 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 CKAP2Q8WWK9 683 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 PRCCQ92733 491 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-202ENST00000375299 TUFT1Q9NNX1 390 aa22.69■■□□□ 1.22
UPF3A-202ENST00000375299 UBE2TQ9NPD8 197 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-202ENST00000375299 UBR3Q6ZT12 1888 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 ACSL3O95573 720 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 FAM178BQ8IXR5 827 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 CYP2W1Q8TAV3 490 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 VTI1AQ96AJ9 217 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 CRAMP1Q96RY5 1269 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 HSD17B14Q9BPX1 270 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 RXFP1Q9HBX9 757 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 AAASQ9NRG9 546 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 ZNF746Q6NUN9 644 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-202ENST00000375299 RNF207Q6ZRF8 634 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 KIF2BQ8N4N8 673 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 ANKRD42Q8N9B4 389 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 CCDC17Q96LX7 622 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 DNAJC18Q9H819 358 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 WHRNQ9P202 907 aa22.68■■□□□ 1.22
UPF3A-202ENST00000375299 CHORDC1Q9UHD1 332 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-202ENST00000375299 QSER1Q2KHR3 1735 aa22.67■■□□□ 1.22
UPF3A-202ENST00000375299 MYH11P35749 1972 aa22.67■■□□□ 1.22
UPF3A-202ENST00000375299 RIMBP2O15034 1052 aa22.67■■□□□ 1.22
UPF3A-202ENST00000375299 EXOC3O60645 756 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms