RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 MMP1P03956 469 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 TAL1P17542 331 aaPredicted RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 VCAM1P19320 739 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 PPATQ06203 517 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 MOGSQ13724 837 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 PPP2R5EQ16537 467 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 FXNQ16595 210 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 QRICH1Q2TAL8 776 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 TM4SF20Q53R12 229 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 EARS2Q5JPH6 523 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 MCTP1Q6DN14 999 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ARMC9Q7Z3E5 817 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 HEATR3Q7Z4Q2 680 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ERO1BQ86YB8 467 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 FAM181AQ8N9Y4 354 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ISL2Q96A47 359 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 COA7Q96BR5 231 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 C8orf48Q96LL4 319 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 C12orf42Q96LP6 360 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 AS3MTQ9HBK9 375 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 BARHL2Q9NY43 387 aa4.05□□□□□ -1.76
MCF2-202ENST00000370573 ISY1Q9ULR0 285 aaKnown RBP4.05□□□□□ -1.76
MCF2-202ENST00000370573 SMCHD1A6NHR9 2005 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 UPK3BL1B0FP48 263 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 C19orf81C9J6K1 198 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 UPK3BL2E5RIL1 263 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 WDR46O15213 610 aaKnown RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 FAM153BP0C7A2 387 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 U2AF2P26368 475 aaKnown RBP eCLIP4.04□□□□□ -1.76
MCF2-202ENST00000370573 CNGA1P29973 690 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 USP14P54578 494 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 CDC37Q16543 378 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 GLIPR1L2Q4G1C9 344 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 LLGL2Q6P1M3 1020 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 OGFOD3Q6PK18 319 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 REC114Q7Z4M0 266 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 WDR75Q8IWA0 830 aaKnown RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 DIS3L2Q8IYB7 885 aaKnown RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 CHURC1Q8WUH1 139 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 LPAR1Q92633 364 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 SLC39A13Q96H72 371 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 RPS6KC1Q96S38 1066 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 RPAP3Q9H6T3 665 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 GBA2Q9HCG7 927 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 SH3GLB2Q9NR46 395 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 ZC3H7BQ9UGR2 993 aaKnown RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 FEM1BQ9UK73 627 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 CNPY2Q9Y2B0 182 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 TCHHQ07283 1943 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 RLFQ13129 1914 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 ZNF536O15090 1300 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 SYNGAP1Q96PV0 1343 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 PASKQ96RG2 1323 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 CXCL11O14625 94 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 MYCLP1P12525 358 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 STAT3P40763 770 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 TOB1P50616 345 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 STAT2P52630 851 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 NLRP5P59047 1200 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 FKBP1BP68106 108 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 IKQ13123 557 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 PPIL2Q13356 520 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 TRIM29Q14134 588 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 INPP5AQ14642 412 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 NFE2Q16621 373 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 MSMPQ1L6U9 139 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 TREML2Q5T2D2 321 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 CATSPERGQ6ZRH7 1159 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 UBE3DQ7Z6J8 389 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 FAM160B2Q86V87 743 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.04□□□□□ -1.76
MCF2-202ENST00000370573 OPTNQ96CV9 577 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 WNK4Q96J92 1243 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 FTOQ9C0B1 505 aaKnown RBP eCLIP4.04□□□□□ -1.76
MCF2-202ENST00000370573 RANBP17Q9H2T7 1088 aaKnown RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 FOXP1Q9H334 677 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 TMX1Q9H3N1 280 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 ZSCAN16Q9H4T2 348 aaPredicted RBP4.04□□□□□ -1.76
MCF2-202ENST00000370573 CHST12Q9NRB3 414 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 SAMM50Q9Y512 469 aa4.04□□□□□ -1.76
MCF2-202ENST00000370573 PTPRFP10586 1907 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 A0A0G2JLL6 359 aaPredicted RBP4.03□□□□□ -1.76
MCF2-202ENST00000370573 A0A1W2PQH9 124 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 SMCO2A6NFE2 343 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 ADCY3O60266 1144 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 CILPO75339 1184 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 KRT2P35908 639 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 NAPAP54920 295 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 CCDC174Q6PII3 467 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 PRRT2Q7Z6L0 340 aaPredicted RBP4.03□□□□□ -1.76
MCF2-202ENST00000370573 NOSTRINQ8IVI9 506 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 C2orf69Q8N8R5 385 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 DAGLBQ8NCG7 672 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 REPS2Q8NFH8 660 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 TBC1D5Q92609 795 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 PKNOX2Q96KN3 472 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 PSMG3-AS1Q96PY0 264 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 USP28Q96RU2 1077 aa4.03□□□□□ -1.76
MCF2-202ENST00000370573 P2RX7Q99572 595 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms