RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 HPCAP84074 193 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TFDP2Q14188 446 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF658Q5TYW1 1059 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 C11orf74Q86VG3 221 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ARMC2Q8NEN0 867 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ACTR5Q9H9F9 607 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 CYP26B1Q9NR63 512 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ADAM22Q9P0K1 906 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 PCDHA7Q9UN72 937 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TARSL2A2RTX5 802 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 APOA1P02647 267 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 IRF1P10914 325 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 CHRNA3P32297 505 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TRPC1P48995 793 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 FKBP3Q00688 224 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SPARCL1Q14515 664 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 CCDC142Q17RM4 750 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 PROSER3Q2NL68 480 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 HEATR6Q6AI08 1181 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 KDELC2Q7Z4H8 507 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ARHGAP18Q8N392 663 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 MAD2L2Q9UI95 211 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 DBNLQ9UJU6 430 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ATP11BQ9Y2G3 1177 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 FAM32AQ9Y421 112 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 NEXMIFQ5QGS0 1516 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SEC31AO94979 1220 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SDC4P31431 198 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 PTH1RQ03431 593 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 NNTQ13423 1086 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 C11orf96Q7Z7L8 435 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 C10orf53Q8N6V4 93 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 COG1Q8WTW3 980 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ANKRD49Q8WVL7 239 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 PIGBQ92521 554 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 RBM41Q96IZ5 413 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 GPR101Q96P66 508 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 FMO2Q99518 471 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 HEMGNQ9BXL5 484 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 POLR3EQ9NVU0 708 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 CRB1P82279 1406 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ADCY9O60503 1353 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SFI1A8K8P3 1242 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 CTIFO43310 598 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TRIM69Q86WT6 500 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 HES6Q96HZ4 224 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 KIF2CQ99661 725 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF229Q9UJW7 825 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 DTNAQ9Y4J8 743 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 PHLPP2Q6ZVD8 1323 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 KBTBD13C9JR72 458 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TTLL4Q14679 1199 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 C6orf118Q5T5N4 469 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 NLRP10Q86W26 655 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TRIM48Q8IWZ4 208 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 MYCBPQ99417 103 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 SPATA16Q9BXB7 569 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 TMEM60Q9H2L4 133 aa10.79□□□□□ -0.68
CLIP1-202ENST00000358808 EML4Q9HC35 981 aaKnown RBP10.79□□□□□ -0.68
CLIP1-202ENST00000358808 EIF4A3P38919 411 aaKnown RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ADCY2Q08462 1091 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 EIF2B5Q13144 721 aaKnown RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 NAALADL2Q58DX5 795 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 SPATA2LQ8IUW3 424 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 FAM161BQ96MY7 647 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 PITPNM3Q9BZ71 974 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ANAPC7Q9UJX3 599 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 PCDHA13Q9Y5I0 950 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 RICTORQ6R327 1708 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 IGSF1Q8N6C5 1336 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 DAB1O75553 588 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ALDH1A2O94788 518 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 MRPS15P82914 257 aaKnown RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 MTMR1Q13613 665 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 VPS72Q15906 364 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 MAGEB10Q96LZ2 347 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TM6SF1Q9BZW5 370 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 NHEJ1Q9H9Q4 299 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 UPP2O95045 317 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 KIZQ2M2Z5 673 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ADCK5Q3MIX3 580 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TBC1D9BQ66K14 1250 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 NUGGCQ68CJ6 796 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 USP17L2Q6R6M4 530 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 SNX31Q8N9S9 440 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TTC13Q8NBP0 860 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 TMEM35BQ8NCS4 154 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF302Q9NR11 478 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 HOXC10Q9NYD6 342 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 FBXO40Q9UH90 709 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ZFP69BQ9UJL9 534 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 RNF123Q5XPI4 1314 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ARHGEF7Q14155 803 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 KCTD17Q8N5Z5 321 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF668Q96K58 619 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 NDEL1Q9GZM8 345 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 ZNF556Q9HAH1 456 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 RAVER2Q9HCJ3 691 aaKnown RBP10.78□□□□□ -0.68
CLIP1-202ENST00000358808 CDC23Q9UJX2 597 aa10.78□□□□□ -0.68
CLIP1-202ENST00000358808 CCDC78A2IDD5 438 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms