RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SKILP12757 684 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 MATR3P43243 847 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-204ENST00000357857 VAMP7P51809 220 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 HIC1Q14526 733 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CXCL17Q6UXB2 119 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 KLHDC9Q8NEP7 349 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CCDC51Q96ER9 411 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 ZBTB45Q96K62 511 aaPredicted RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 PANX2Q96RD6 677 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 PPP1R16BQ96T49 567 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 ACO2Q99798 780 aaKnown RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 TTYH3Q9C0H2 523 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 KIAA1586Q9HCI6 787 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 ANKFY1Q9P2R3 1169 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 HDAC6Q9UBN7 1215 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 AGO2Q9UKV8 859 aaKnown RBP20.36■□□□□ 0.85
CLN3-204ENST00000357857 PYCARDQ9ULZ3 195 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 CAPN11Q9UMQ6 739 aa20.36■□□□□ 0.85
CLN3-204ENST00000357857 FRMPD3Q5JV73 1810 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 ACKR2O00590 384 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 EXTL3O43909 919 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 INHAP05111 366 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 TRIM49P0CI25 452 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 TRIM49CP0CI26 452 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 CST5P28325 142 aaPredicted RBP20.35■□□□□ 0.85
CLN3-204ENST00000357857 GPC3P51654 580 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 HSP90AA2PQ14568 343 aaPredicted RBP20.35■□□□□ 0.85
CLN3-204ENST00000357857 ZNF410Q86VK4 478 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 NLRP7Q8WX94 980 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 CRACR2AQ9BSW2 395 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 FAM49AQ9H0Q0 323 aaPredicted RBP20.35■□□□□ 0.85
CLN3-204ENST00000357857 MINDY3Q9H8M7 445 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 PRMT7Q9NVM4 692 aaPredicted RBP20.35■□□□□ 0.85
CLN3-204ENST00000357857 TRIM17Q9Y577 477 aa20.35■□□□□ 0.85
CLN3-204ENST00000357857 A0A0B4J269 797 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 TTLL13PA6NNM8 815 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 RNF225M0QZC1 329 aaPredicted RBP20.34■□□□□ 0.85
CLN3-204ENST00000357857 HOXC8P31273 242 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 FMO5P49326 533 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 NLRP11P59045 1033 aaKnown RBP20.34■□□□□ 0.85
CLN3-204ENST00000357857 CDC42EP1Q00587 391 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 DNAJC5GQ8N7S2 189 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 NEK11Q8NG66 645 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 MFSD14AQ96MC6 490 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 SCLT1Q96NL6 688 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 FAM213AQ9BRX8 229 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 MSTO1Q9BUK6 570 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 LSM14BQ9BX40 385 aaKnown RBP20.34■□□□□ 0.85
CLN3-204ENST00000357857 HAPLN2Q9GZV7 340 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 TMX1Q9H3N1 280 aa20.34■□□□□ 0.85
CLN3-204ENST00000357857 FAM207AQ9NSI2 230 aaPredicted RBP20.34■□□□□ 0.85
CLN3-204ENST00000357857 LUC7L2Q9Y383 392 aaKnown RBP20.34■□□□□ 0.85
CLN3-204ENST00000357857 A0A1W2PQJ5 194 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 GTPBP10A4D1E9 387 aaKnown RBP20.33■□□□□ 0.85
CLN3-204ENST00000357857 TREHO43280 583 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 TOM1L1O75674 476 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 LDHAP00338 332 aaKnown RBP20.33■□□□□ 0.85
CLN3-204ENST00000357857 GRK4P32298 578 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 KRT9P35527 623 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 MCCD1P59942 119 aaPredicted RBP20.33■□□□□ 0.85
CLN3-204ENST00000357857 PRPF4BQ13523 1007 aaKnown RBP20.33■□□□□ 0.85
CLN3-204ENST00000357857 FAM187BQ17R55 369 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 GBP6Q6ZN66 633 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 RUFY4Q6ZNE9 571 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 PTCH2Q9Y6C5 1203 aa20.33■□□□□ 0.85
CLN3-204ENST00000357857 ZNF233A6NK53 670 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 CLDN3O15551 220 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 MYCNP04198 464 aaPredicted RBP20.33■□□□□ 0.84
CLN3-204ENST00000357857 DLG4P78352 724 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 ZNF200P98182 395 aaPredicted RBP20.33■□□□□ 0.84
CLN3-204ENST00000357857 CYP24A1Q07973 514 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 KCNA10Q16322 511 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 EXOC3L4Q17RC7 722 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 NBPF20Q3BBV1 942 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 TSHZ1Q6ZSZ6 1077 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 PCSK9Q8NBP7 692 aaKnown RBP20.33■□□□□ 0.84
CLN3-204ENST00000357857 PLEKHO2Q8TD55 490 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 TMC2Q8TDI7 906 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 BAG1Q99933 345 aaPredicted RBP20.33■□□□□ 0.84
CLN3-204ENST00000357857 ABHD10Q9NUJ1 306 aa20.33■□□□□ 0.84
CLN3-204ENST00000357857 ASGR1P07306 291 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 IQCF3P0C7M6 154 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 ENPEPQ07075 957 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 TMEM132AQ24JP5 1023 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 ATF7IP2Q5U623 682 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 CCSAPQ6IQ19 270 aaPredicted RBP20.32■□□□□ 0.84
CLN3-204ENST00000357857 SRGAP1Q7Z6B7 1085 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 USP37Q86T82 979 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 TMEM139Q8IV31 216 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 ZNF397Q8NF99 534 aaPredicted RBP20.32■□□□□ 0.84
CLN3-204ENST00000357857 TCHPQ9BT92 498 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 HMX1Q9NP08 348 aaPredicted RBP20.32■□□□□ 0.84
CLN3-204ENST00000357857 AGPAT5Q9NUQ2 364 aa20.32■□□□□ 0.84
CLN3-204ENST00000357857 EPHB6O15197 1021 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 B4GALT5O43286 388 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 N4BP1O75113 896 aaKnown RBP20.31■□□□□ 0.84
CLN3-204ENST00000357857 ZBED6P86452 979 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 MYL7Q01449 175 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 KIZQ2M2Z5 673 aa20.31■□□□□ 0.84
CLN3-204ENST00000357857 CBWD6Q4V339 395 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms