RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 KCNJ6P48051 423 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 NNTQ13423 1086 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 LY6KQ17RY6 165 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 SPECC1LQ69YQ0 1117 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 MIS18BP1Q6P0N0 1132 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 DPP9Q86TI2 863 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 SMYD4Q8IYR2 804 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 CCDC47Q96A33 483 aaKnown RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 LBHD1Q9BQE6 289 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 ANKEF1Q9NU02 776 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 EHD2Q9NZN4 543 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 GDAQ9Y2T3 454 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 NFE2L3Q9Y4A8 694 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 GSTTP1A0A1W2PQM5 241 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 ESYT3A0FGR9 886 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 GOLGA6L9A6NEM1 432 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 TPP2P29144 1249 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 PRCPP42785 496 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 POLE2P56282 527 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 STK4Q13043 487 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 COASYQ13057 564 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 CDCA2Q69YH5 1023 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 KIAA0895Q8NCT3 520 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 SCFD2Q8WU76 684 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 NOD2Q9HC29 1040 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-203ENST00000354674 SLC5A4Q9NY91 659 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 MYO1AQ9UBC5 1043 aa10.94□□□□□ -0.66
SYNE1-203ENST00000354674 NPHP3-ACAD11A0A0J9YXS1 232 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ZNF862O60290 1169 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 DKC1O60832 514 aaKnown RBP eCLIP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ATP1A1P05023 1023 aaKnown RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CTGFP29279 349 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 YWHABP31946 246 aaKnown RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CXCR5P32302 372 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PPP1R2P41236 205 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 RARRES1P49788 294 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 GUCY2FP51841 1108 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 EEPD1Q7L9B9 569 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PPFIBP1Q86W92 1011 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CCDC60Q8IWA6 550 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PRCCQ92733 491 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 REEP2Q9BRK0 252 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 TINF2Q9BSI4 451 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 YIPF2Q9BWQ6 316 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 OSBPL7Q9BZF2 842 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PANK4Q9NVE7 773 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 RWDD2AQ9UIY3 292 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 GGPS1O95749 300 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 TMOD1P28289 359 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 AARSP49588 968 aaKnown RBP eCLIP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ZNF131P52739 623 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 TTLL4Q14679 1199 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 OLFML2BQ68BL8 750 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CCDC65Q8IXS2 484 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ATP6V0A1Q93050 837 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 EMID1Q96A84 441 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PCYT2Q99447 389 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ATP6V0A4Q9HBG4 840 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PDGFCQ9NRA1 345 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 PAPOLBQ9NRJ5 636 aaKnown RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 GABBR1Q9UBS5 961 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ARID2Q68CP9 1835 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 OATP04181 439 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CASP14P31944 242 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 QPCTQ16769 361 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 SWSAP1Q6NVH7 229 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 MICALCLQ6ZW33 695 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 ANO5Q75V66 913 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 NLRP14Q86W24 1093 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 SOCS4Q8WXH5 440 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 IFT81Q8WYA0 676 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 DHTKD1Q96HY7 919 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 GPR20Q99678 358 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 KDM4CQ9H3R0 1056 aa10.93□□□□□ -0.66
SYNE1-203ENST00000354674 CHCHD3Q9NX63 227 aaKnown RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 DMGDHQ9UI17 866 aaKnown RBP10.93□□□□□ -0.66
SYNE1-203ENST00000354674 FOXR2Q6PJQ5 311 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 SEPT1Q8WYJ6 367 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 TSC22D3Q99576 134 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 TIPINQ9BVW5 301 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 ABHD16BQ9H3Z7 469 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 AKR1B15C9JRZ8 316 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-203ENST00000354674 TXNP10599 105 aaKnown RBP10.92□□□□□ -0.66
SYNE1-203ENST00000354674 ZNF18P17022 549 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 ATP4AP20648 1035 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 SPATA1Q5VX52 437 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 ZNF570Q96NI8 536 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 TRIM4Q9C037 500 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 FLRT1Q9NZU1 646 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 LNPEPQ9UIQ6 1025 aa10.92□□□□□ -0.66
SYNE1-203ENST00000354674 ARHGEF35A5YM69 484 aa10.91□□□□□ -0.66
SYNE1-203ENST00000354674 CTCFP49711 727 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-203ENST00000354674 PAPOLAP51003 745 aaKnown RBP10.91□□□□□ -0.66
SYNE1-203ENST00000354674 RNASE9P60153 205 aaKnown RBP10.91□□□□□ -0.66
SYNE1-203ENST00000354674 ARHGAP1Q07960 439 aa10.91□□□□□ -0.66
SYNE1-203ENST00000354674 PAK1Q13153 545 aa10.91□□□□□ -0.66
SYNE1-203ENST00000354674 MAPK7Q13164 816 aa10.91□□□□□ -0.66
SYNE1-203ENST00000354674 FAM133BQ5BKY9 247 aaKnown RBP10.91□□□□□ -0.66
SYNE1-203ENST00000354674 TMEM63BQ5T3F8 832 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms