RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 CCDC51Q96ER9 411 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 KLHL5Q96PQ7 755 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 RNF39Q9H2S5 420 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 UBN1Q9NPG3 1134 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 STK39Q9UEW8 545 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 INO80B-WBP1J3KQ70 363 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 INPPL1O15357 1258 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 NEMFO60524 1076 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 LILRB3O75022 631 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 CNPP09543 421 aaKnown RBP16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 ARL2P36404 184 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 TXKP42681 527 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 VCPP55072 806 aaKnown RBP16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 CAPSQ13938 189 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 TFDP1Q14186 410 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 CABP7Q86V35 215 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 COLGALT2Q8IYK4 626 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 MTMR9Q96QG7 549 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 PRRX2Q99811 253 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 CSRNP2Q9H175 543 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 MARCH5Q9NX47 278 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 SORCS3Q9UPU3 1222 aa16.08■□□□□ 0.17
PRPF40A-201ENST00000354363 TRIP11Q15643 1979 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 ARL5CA6NH57 179 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 KLRC2P26717 231 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 RARRES1P49788 294 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 CLCN4P51793 760 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 PTPN5P54829 565 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 MBTD1Q05BQ5 628 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 AMHR2Q16671 573 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 TMC5Q6UXY8 1006 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 TDRD5Q8NAT2 981 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 GAD1Q99259 594 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 EMILIN2Q9BXX0 1053 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 SFXN1Q9H9B4 322 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 MIOSQ9NXC5 875 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 DBR1Q9UK59 544 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 HES2Q9Y543 173 aa16.08■□□□□ 0.16
PRPF40A-201ENST00000354363 DOCK8Q8NF50 2099 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 A0A087WWV3 80 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 BRD1O95696 1058 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 PDGFBP01127 241 aaPredicted RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 SOD2P04179 222 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 ARF4P18085 180 aaPredicted RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 GLRA2P23416 452 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 MLH1P40692 756 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 NEK4P51957 841 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 DSC1Q08554 894 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 NCBP1Q09161 790 aaKnown RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 ST3GAL1Q11201 340 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 TCF15Q12870 199 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 MTMR3Q13615 1198 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 TRIM29Q14134 588 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 UBALD2Q8IYN6 164 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 ZDHHC14Q8IZN3 488 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 PIGOQ8TEQ8 1089 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 CCDC43Q96MW1 224 aaKnown RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 PHOX2BQ99453 314 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 HERC2P3Q9BVR0 1158 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 NFKBIZQ9BYH8 718 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 TMEM60Q9H2L4 133 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 MRPL17Q9NRX2 175 aaKnown RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 USTQ9Y2C2 406 aa16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 PRG3Q9Y2Y8 225 aaPredicted RBP16.07■□□□□ 0.16
PRPF40A-201ENST00000354363 POTEMA6NI47 508 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 ASGR2P07307 311 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 AVPR2P30518 371 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 OR1G1P47890 313 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 SCNN1GP51170 649 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 TAS1R1Q7RTX1 841 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 GPR149Q86SP6 731 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 RNF168Q8IYW5 571 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 ZFP42Q96MM3 310 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 APOL6Q9BWW8 343 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 POLR3FQ9H1D9 316 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 SMOC2Q9H3U7 446 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 LIMD1Q9UGP4 676 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 DOCK6Q96HP0 2047 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 CACNA1HO95180 2353 aa16.06■□□□□ 0.16
PRPF40A-201ENST00000354363 C2CD2LO14523 706 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 B4GALT5O43286 388 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 EFEMP2O95967 443 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 URODP06132 367 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 SPATA31C1P0DKV0 1188 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 XRCC6P12956 609 aaKnown RBP eCLIP16.05■□□□□ 0.166e-6■■■■■ 31.4
PRPF40A-201ENST00000354363 PLCD3Q8N3E9 789 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 NXF3Q9H4D5 531 aaKnown RBP16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 GIT1Q9Y2X7 761 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 SPDYE4A6NLX3 237 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 USO1O60763 962 aaKnown RBP16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 CDR2LQ86X02 465 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 RPS6KC1Q96S38 1066 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 TRIM6Q9C030 488 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 SSX2IPQ9Y2D8 614 aa16.05■□□□□ 0.16
PRPF40A-201ENST00000354363 F8W810 466 aa16.04■□□□□ 0.16
PRPF40A-201ENST00000354363 NPTXRO95502 500 aa16.04■□□□□ 0.16
PRPF40A-201ENST00000354363 ATP2B1P20020 1258 aa16.04■□□□□ 0.16
PRPF40A-201ENST00000354363 MCM7P33993 719 aa16.04■□□□□ 0.16
PRPF40A-201ENST00000354363 KIAA0319Q5VV43 1072 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms