RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 HS2ST1Q7LGA3 356 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 SYCP3Q8IZU3 236 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 ATP6V0A1Q93050 837 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 IQCDQ96DY2 449 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 CEP170P1Q96L14 293 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 NLRC4Q9NPP4 1024 aa10.09□□□□□ -0.79
ATG4A-202ENST00000345734 GEMIN8Q9NWZ8 242 aaKnown RBP10.09□□□□□ -0.79
ATG4A-202ENST00000345734 UNCXA6NJT0 531 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 SLC16A4O15374 487 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 CTIFO43310 598 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 AFPP02771 609 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 SUPT20HL2P0C7V6 817 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 CYP2C8P10632 490 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 MAPTP10636 758 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 ACTN1P12814 892 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 XRCC5P13010 732 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 UBA1P22314 1058 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 HNRNPH3P31942 346 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 GRM5P41594 1212 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 POLR2FP61218 127 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 SNAPC2Q13487 334 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 TCERG1LQ5VWI1 586 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 PDXDC1Q6P996 788 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 TAS1R3Q7RTX0 852 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 CACNA2D4Q7Z3S7 1137 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 FAM186BQ8IYM0 893 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 SLC35C1Q96A29 364 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 FGD4Q96M96 766 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 DRC1Q96MC2 740 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 KIFC3Q9BVG8 833 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 METTL14Q9HCE5 456 aaKnown RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 DMAC2Q9NW81 257 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 ARHGAP20Q9P2F6 1191 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 TRIM10Q9UDY6 481 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 PLAGL2Q9UPG8 496 aa10.08□□□□□ -0.8
ATG4A-202ENST00000345734 DNMT3AQ9Y6K1 912 aaPredicted RBP10.08□□□□□ -0.8
ATG4A-202ENST00000345734 SYNGAP1Q96PV0 1343 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 SLC25A27O95847 323 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 SLC9A1P19634 815 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ATP4AP20648 1035 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CASQ1P31415 396 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 PSMC2P35998 433 aaKnown RBP10.07□□□□□ -0.8
ATG4A-202ENST00000345734 WNT7BP56706 349 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ERVK-9P63128 1117 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CDK17Q00537 523 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 DPY19L2P1Q6NXN4 242 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 MIS18BP1Q6P0N0 1132 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 OTUD6AQ7L8S5 288 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 HAUS6Q7Z4H7 955 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 GLYCTKQ8IVS8 523 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 BSNDQ8WZ55 320 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 TIPINQ9BVW5 301 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 GANQ9H2C0 597 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 PCIF1Q9H4Z3 704 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CEP72Q9P209 647 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 IGSF9BQ9UPX0 1349 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CCDC169A6NNP5 214 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ZNF263O14978 683 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ITGBL1O95965 494 aaPredicted RBP10.07□□□□□ -0.8
ATG4A-202ENST00000345734 WEE1P30291 646 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 NPTX2P47972 431 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 NCKAP1LP55160 1127 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 GTF2BQ00403 316 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CYP27A1Q02318 531 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ARHGAP29Q52LW3 1261 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 WDR78Q5VTH9 848 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 LRRN4CLQ8ND94 238 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ZSWIM2Q8NEG5 633 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ACCSQ96QU6 501 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 MMP19Q99542 508 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 EDEM3Q9BZQ6 932 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 L2HGDHQ9H9P8 463 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 CYP26B1Q9NR63 512 aa10.07□□□□□ -0.8
ATG4A-202ENST00000345734 ZNF215Q9UL58 517 aaPredicted RBP10.07□□□□□ -0.8
ATG4A-202ENST00000345734 MYH10P35580 1976 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 GSTTP1A0A1W2PQM5 241 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 KIF5CO60282 957 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 TLR2O60603 784 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 DKC1O60832 514 aaKnown RBP eCLIP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 URI1O94763 535 aaPredicted RBP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 FARP2O94887 1054 aaPredicted RBP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 TRIM49P0CI25 452 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 TRIM49CP0CI26 452 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 PON1P27169 355 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 CYLC1P35663 651 aaPredicted RBP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 GGCXP38435 758 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 EIF4A3P38919 411 aaKnown RBP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 GDF10P55107 478 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 FAM193AP78312 1265 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 PPP2R3AQ06190 1150 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 EXOC3L4Q17RC7 722 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 LY6KQ17RY6 165 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 MTERF2Q49AM1 385 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 ZNF569Q5MCW4 686 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 CCDC170Q8IYT3 715 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 TMEM161BQ8NDZ6 487 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 C1orf216Q8TAB5 229 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 GOLGA5Q8TBA6 731 aa10.06□□□□□ -0.8
ATG4A-202ENST00000345734 SCG3Q8WXD2 468 aaKnown RBP10.06□□□□□ -0.8
ATG4A-202ENST00000345734 CCDC42Q96M95 316 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms