RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 DHX34Q14147 1143 aaKnown RBP13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 CDO1Q16878 200 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 GNPTABQ3T906 1256 aa13.28□□□□□ -0.28
SNRNP48-201ENST00000342415 CFAP69A5D8W1 941 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 ENO4A6NNW6 628 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 TMEM191BP0C7N4 346 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 MYBL1P10243 752 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 PHBP35232 272 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 PPP4CP60510 307 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 SPATA21Q7Z572 469 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 NLGN1Q8N2Q7 840 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 SYT2Q8N9I0 419 aaPredicted RBP13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 DCAF4Q8WV16 495 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 CALR3Q96L12 384 aaKnown RBP13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 CFAP57Q96MR6 1250 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 PABPC3Q9H361 631 aaKnown RBP13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 CPSF2Q9P2I0 782 aaKnown RBP13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 POLLQ9UGP5 575 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 CACNA1FO60840 1977 aa13.27□□□□□ -0.28
SNRNP48-201ENST00000342415 TISP43B9A030 160 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 IGF2BP3O00425 579 aaKnown RBP eCLIP13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 TLR3O15455 904 aaKnown RBP13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 MT-ND3P03897 115 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 IGBP1P78318 339 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 MAPK7Q13164 816 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 DNAJC3Q13217 504 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 SYN2Q92777 582 aaPredicted RBP13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 CBWD1Q9BRT8 395 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 ESYT2A0FGR8 921 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 TLR2O60603 784 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 PHF2O75151 1096 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 RNF8O76064 485 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 SGPL1O95470 568 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 DTX3LQ8TDB6 740 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 NOD2Q9HC29 1040 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 AGPAT3Q9NRZ7 376 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 PRR12Q9ULL5 1215 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 SUFUQ9UMX1 484 aa13.27□□□□□ -0.29
SNRNP48-201ENST00000342415 CALCAP01258 141 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 TMEM253P0C7T8 217 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 SRGAP2CP0DJJ0 459 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 HSPA9P38646 679 aaKnown RBP13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 ACOT2P49753 483 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 NSMCE1Q8WV22 266 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 ARHGEF26Q96DR7 871 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 RMDN3Q96TC7 470 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 VCXQ9H320 206 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 RIOX1Q9H6W3 641 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 TAS2R14Q9NYV8 317 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 HSPBP1Q9NZL4 362 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 USP20Q9Y2K6 914 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 USP15Q9Y4E8 981 aaPredicted RBP13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 RGPD8O14715 1765 aaPredicted RBP13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 MAPK13O15264 365 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 OPHN1O60890 802 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 SHBGP04278 402 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 RAD23BP54727 409 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 SPARCL1Q14515 664 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 KRT39Q6A163 491 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 CEP128Q6ZU80 1094 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 BBOF1Q8ND07 529 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 ZNF384Q8TF68 577 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 ERP27Q96DN0 273 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 TSNARE1Q96NA8 513 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 PICK1Q9NRD5 415 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 F8VZ95 297 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 OPLAHO14841 1288 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 HMGB2P26583 209 aaKnown RBP13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 ECE1P42892 770 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 BPIFB4P59827 614 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 PDIA2Q13087 525 aaKnown RBP13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 GRM1Q13255 1194 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 KRT81Q14533 505 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 AGBL2Q5U5Z8 902 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 THNSL1Q8IYQ7 743 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 RUBCNQ92622 972 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 KRT35Q92764 455 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 HAS1Q92839 578 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 PAGR1Q9BTK6 254 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 TXLNGQ9NUQ3 528 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 STK32BQ9NY57 414 aa13.26□□□□□ -0.29
SNRNP48-201ENST00000342415 TMEM150BA6NC51 233 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 INO80B-WBP1J3KQ70 363 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 K7ERI5 159 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 AGTP01019 485 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 ESRRAP11474 423 aaPredicted RBP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 MARK3P27448 753 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 PPP2R5CQ13362 524 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 HADHQ16836 314 aaKnown RBP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 ZNF354CQ86Y25 554 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 HSPH1Q92598 858 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 GBP5Q96PP8 586 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 RBM15Q96T37 977 aaKnown RBP eCLIP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 INO80BQ9C086 356 aaPredicted RBP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 CARD9Q9H257 536 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 VCPKMTQ9H867 229 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 MRPL47Q9HD33 250 aaKnown RBP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 DDX4Q9NQI0 724 aaKnown RBP13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 GDF3Q9NR23 364 aa13.25□□□□□ -0.29
SNRNP48-201ENST00000342415 FAM53CQ9NYF3 392 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms