RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MTMR8Q96EF0 704 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 APEX2Q9UBZ4 518 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 DCDC2CA8MYV0 355 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 KRIT1O00522 736 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 PSMD10O75832 226 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NLRP11P59045 1033 aaKnown RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 BFSP2Q13515 415 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NFE2Q16621 373 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 THEM5Q8N1Q8 247 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 CCDC89Q8N998 374 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 PEAK1Q9H792 1746 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 CA12O43570 354 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 KLRC1P26715 233 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NPTX2P47972 431 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 SARSP49591 514 aaKnown RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM270Q6UE05 265 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MICALCLQ6ZW33 695 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF354CQ86Y25 554 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 REPS2Q8NFH8 660 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 P3H4Q92791 437 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 CCDC114Q96M63 670 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 CNOT8Q9UFF9 292 aaKnown RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NRBP1Q9UHY1 535 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 INTUQ9ULD6 942 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 USTQ9Y2C2 406 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 A0A1W2PQJ5 194 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 LRRC53A6NM62 1247 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM110-MUSTN1A8MSY1 372 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 E7EVH7 732 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 RPS6KA5O75582 802 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MYBL1P10243 752 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GPC3P51654 580 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ARL13BQ3SXY8 428 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ARMCX6Q7L4S7 300 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 DNAJC18Q9H819 358 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NHEJ1Q9H9Q4 299 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF214Q9UL59 606 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF148Q9UQR1 794 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA6CA6NDK9 693 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA6BA6NDN3 693 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 A6NJR5 290 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TEX33O43247 280 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA6DP0CG33 693 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 NFKBIAP25963 317 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 PSMC4P43686 418 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 HSD17B4P51659 736 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MAP2K1Q02750 393 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 IRF5Q13568 498 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GIT2Q14161 759 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 MESDQ14696 234 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM119Q4V9L6 283 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 ATF7IP2Q5U623 682 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 RNF139Q8WU17 664 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM143Q96AN5 459 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 DDX27Q96GQ7 796 aaKnown RBP7.36□□□□□ -1.23
SF3B1-201ENST00000335508 GOLGA6AQ9NYA3 693 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 TBX20Q9UMR3 447 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 LRP6O75581 1613 aa7.36□□□□□ -1.23
SF3B1-201ENST00000335508 SLITRK3O94933 977 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 STAG3L1P0CL83 205 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 OSTNP61366 133 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 CDK17Q00537 523 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 MAP2K5Q13163 448 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 LONRF2Q1L5Z9 754 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 DCAF4L1Q3SXM0 396 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 DUSP28Q4G0W2 176 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 GLE1Q53GS7 698 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 PDXDC1Q6P996 788 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF410Q86VK4 478 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 FUCA2Q9BTY2 467 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 ST6GALNAC4Q9H4F1 302 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 NKIRAS1Q9NYS0 192 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 PIN4Q9Y237 131 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 RHOXF2BP0C7M4 288 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 UBA1P22314 1058 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 EIF4BP23588 611 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 NCOA4Q13772 614 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 NR1I3Q14994 352 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 AMIGO3Q86WK7 504 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 AFG1LQ8WV93 481 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 MAGOHBQ96A72 148 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 PNMA5Q96PV4 448 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 RHOXF2Q9BQY4 288 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 CYP3A43Q9HB55 503 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 AGO4Q9HCK5 861 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 SCAF8Q9UPN6 1271 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 TLDC2A0PJX2 215 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 EXTL3O43909 919 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 INSRRP14616 1297 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 RAB27AP51159 221 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 SLC35F6Q8N357 371 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 URGCPQ8TCY9 931 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 IFT81Q8WYA0 676 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 TNFRSF25Q93038 417 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 SLC35C1Q96A29 364 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 MBOAT7Q96N66 472 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 NGRNQ9NPE2 291 aaKnown RBP7.35□□□□□ -1.23
SF3B1-201ENST00000335508 FAM114A2Q9NRY5 505 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 COMMD10Q9Y6G5 202 aa7.35□□□□□ -1.23
SF3B1-201ENST00000335508 SORBS3O60504 671 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms