RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ARHGAP29Q52LW3 1261 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MUM1L1Q5H9M0 696 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ATAT1Q5SQI0 421 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZBTB41Q5SVQ8 909 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ARTNQ5T4W7 220 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MOB2Q70IA6 237 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ATG9AQ7Z3C6 839 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 KIAA0907Q7Z7F0 614 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DEPDC4Q8N2C3 294 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SLC44A3Q8N4M1 653 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ANKRD13CQ8N6S4 541 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM176AQ96HP8 235 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MTMR9Q96QG7 549 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 INSM2Q96T92 566 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 GABRG3Q99928 467 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 LARP6Q9BRS8 491 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MUC3BQ9H195 1237 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CDT1Q9H211 546 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TRIT1Q9H3H1 467 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TBC1D7Q9P0N9 293 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 NCDNQ9UBB6 729 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 NSFL1CQ9UNZ2 370 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SUPT16HQ9Y5B9 1047 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PCDHGA9Q9Y5G4 932 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 A0A0A6YYJ9 748 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TCRBV5S4A2TA0A5A2 114 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SLCO1B7G3V0H7 640 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CDX4O14627 284 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ENPP3O14638 875 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PPFIA3O75145 1194 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF217O75362 1048 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 EIF3JO75822 258 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SOD2P04179 222 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CD59P13987 128 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 NCLP19338 710 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TNFRSF8P28908 595 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SSTR2P30874 369 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 LSSP48449 732 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 RGS3P49796 1198 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CRYBB1P53674 252 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 FUT2Q10981 343 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TRA2AQ13595 282 aaKnown RBP eCLIP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TTLL12Q14166 644 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MFSD10Q14728 455 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM132BQ14DG7 1078 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ARL13BQ3SXY8 428 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PLK5Q496M5 336 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ACBD5Q5T8D3 534 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SUSD1Q6UWL2 747 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 RPTNQ6XPR3 784 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 RSRC2Q7L4I2 434 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DDX51Q8N8A6 666 aaKnown RBP eCLIP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF564Q8TBZ8 553 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 FBXW7Q969H0 707 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF419Q96HQ0 510 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 VCPIP1Q96JH7 1222 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TBC1D32Q96NH3 1257 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 FUCA2Q9BTY2 467 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CYP39A1Q9NYL5 469 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SPG21Q9NZD8 308 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ANKIB1Q9P2G1 1089 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PCDHGB6Q9Y5F9 930 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZHX2Q9Y6X8 837 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TEP1Q99973 2627 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ANKHD1Q8IWZ3 2542 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 KIAA1549Q9HCM3 1950 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DNAH1Q9P2D7 4330 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SPATA31C2B4DYI2 1134 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 TSPAN3O60637 253 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PTCD1O75127 700 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZBED4O75132 1171 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 F13BP05160 661 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 CYP3A4P08684 503 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 LAMP2P13473 410 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PPP2R1AP30153 589 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 BTDP43251 543 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PCBP4P57723 403 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF252P-AS1Q0IIN9 211 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 TRIM32Q13049 653 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 HSP90AA2PQ14568 343 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MBTPS1Q14703 1052 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 USH1GQ495M9 461 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 RBM26Q5T8P6 1007 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 IL31Q6EBC2 164 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 CCDC149Q6ZUS6 474 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SIAH1Q8IUQ4 282 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 NOSTRINQ8IVI9 506 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 MFSD6LQ8IWD5 586 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 FAM217AQ8IXS0 508 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 TCEAL8Q8IYN2 117 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 SCML4Q8N228 414 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF808Q8N4W9 903 aaPredicted RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZDHHC16Q969W1 377 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 FAM167AQ96KS9 214 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 RIOK1Q9BRS2 568 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ZPBPQ9BS86 351 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 PORCNQ9H237 461 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 ABCB6Q9NP58 842 aa1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DDX43Q9NXZ2 648 aaKnown RBP1.86□□□□□ -2.11
LINC00643-201ENST00000334389 DONSONQ9NYP3 566 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms